miRNA display CGI


Results 41 - 60 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29589 3' -57.7 NC_006151.1 + 85928 0.66 0.816768
Target:  5'- gGAgGGGC-UGGGCcugCUGCUGCAGc -3'
miRNA:   3'- -CUgCCUGuACCCGuugGACGGCGUCu -5'
29589 3' -57.7 NC_006151.1 + 82652 0.66 0.821931
Target:  5'- uGCGG-CGaGGGCGGCCcacccugcggcgcGCCGCGGGc -3'
miRNA:   3'- cUGCCuGUaCCCGUUGGa------------CGGCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 36016 0.66 0.825338
Target:  5'- cGACGGcgGCAgccaGGGCucCCggcGCCGCGGc -3'
miRNA:   3'- -CUGCC--UGUa---CCCGuuGGa--CGGCGUCu -5'
29589 3' -57.7 NC_006151.1 + 99547 0.66 0.825338
Target:  5'- cACGGAgcaCGUGGGCGcggcgcgcgcgGCgCUGCUGCGcGAg -3'
miRNA:   3'- cUGCCU---GUACCCGU-----------UG-GACGGCGU-CU- -5'
29589 3' -57.7 NC_006151.1 + 100352 0.66 0.825338
Target:  5'- uGGCGGACgucguggacgccGUGGGCG-CCUuCCGCGc- -3'
miRNA:   3'- -CUGCCUG------------UACCCGUuGGAcGGCGUcu -5'
29589 3' -57.7 NC_006151.1 + 135175 0.66 0.799132
Target:  5'- gGACGGGCGccGGCuGCC-GCCGCcGGg -3'
miRNA:   3'- -CUGCCUGUacCCGuUGGaCGGCGuCU- -5'
29589 3' -57.7 NC_006151.1 + 122772 0.66 0.799132
Target:  5'- cGACGGGCugcucGUGGGCGGCUg--CGCGGc -3'
miRNA:   3'- -CUGCCUG-----UACCCGUUGGacgGCGUCu -5'
29589 3' -57.7 NC_006151.1 + 132841 0.67 0.762118
Target:  5'- gGACGGcCAccacGGGCGGCCggcccgggGCCGCGc- -3'
miRNA:   3'- -CUGCCuGUa---CCCGUUGGa-------CGGCGUcu -5'
29589 3' -57.7 NC_006151.1 + 100175 0.67 0.771567
Target:  5'- --aGGACAUggccacccacacGGGCGACCUGCUGgAc- -3'
miRNA:   3'- cugCCUGUA------------CCCGUUGGACGGCgUcu -5'
29589 3' -57.7 NC_006151.1 + 65818 0.67 0.771567
Target:  5'- cGCGGugGaUGGGCGGCCgcGCCagcGCGGc -3'
miRNA:   3'- cUGCCugU-ACCCGUUGGa-CGG---CGUCu -5'
29589 3' -57.7 NC_006151.1 + 93442 0.67 0.771567
Target:  5'- gGGCGaGCggGGGUcGCC-GCCGCGGGg -3'
miRNA:   3'- -CUGCcUGuaCCCGuUGGaCGGCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 50167 0.67 0.771567
Target:  5'- aGCGGACGaGcGCGGCCgGCCGCGc- -3'
miRNA:   3'- cUGCCUGUaCcCGUUGGaCGGCGUcu -5'
29589 3' -57.7 NC_006151.1 + 64502 0.67 0.779966
Target:  5'- cGCGGGCGgcGGGCGcgcgccgccaaagGCC-GCCGCGGc -3'
miRNA:   3'- cUGCCUGUa-CCCGU-------------UGGaCGGCGUCu -5'
29589 3' -57.7 NC_006151.1 + 90760 0.67 0.780892
Target:  5'- cGGCGGGCAcgguggcgGGGuCGGCggGCgCGCAGAa -3'
miRNA:   3'- -CUGCCUGUa-------CCC-GUUGgaCG-GCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 137858 0.67 0.780892
Target:  5'- cACGGGCGUguacgcgcacgGGcGCAGCCUGCgGCu-- -3'
miRNA:   3'- cUGCCUGUA-----------CC-CGUUGGACGgCGucu -5'
29589 3' -57.7 NC_006151.1 + 90649 0.67 0.780892
Target:  5'- cGAUGGGCGUguacaugcgcgGGGCGGCggGCCGCu-- -3'
miRNA:   3'- -CUGCCUGUA-----------CCCGUUGgaCGGCGucu -5'
29589 3' -57.7 NC_006151.1 + 133381 0.67 0.781817
Target:  5'- uGGCGG-CcgGGGCGgcggccgggGCCgagcgggcggucuugGCCGCGGAc -3'
miRNA:   3'- -CUGCCuGuaCCCGU---------UGGa--------------CGGCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 4690 0.66 0.790083
Target:  5'- --aGGACAUGgccucgccGGCGGCCccGCUGUAGAu -3'
miRNA:   3'- cugCCUGUAC--------CCGUUGGa-CGGCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 55491 0.66 0.790083
Target:  5'- cGCGGAC--GGcCAGCC-GCCGCGGGa -3'
miRNA:   3'- cUGCCUGuaCCcGUUGGaCGGCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 124138 0.66 0.798234
Target:  5'- cACGGugGUGcGGCuggagcccgagcaGGCCUGCCccgaguacucGCAGGg -3'
miRNA:   3'- cUGCCugUAC-CCG-------------UUGGACGG----------CGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.