miRNA display CGI


Results 1 - 20 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29589 5' -64.5 NC_006151.1 + 112434 0.66 0.545399
Target:  5'- cCGCGcCGCcGcCGCCgCGCgCCAUggGCUGGa -3'
miRNA:   3'- -GUGC-GCGcC-GCGGgGCG-GGUA--CGACC- -5'
29589 5' -64.5 NC_006151.1 + 26327 0.66 0.545399
Target:  5'- aGCGCGgGGCGaggCCCGCCuCAcgggGCggcGGc -3'
miRNA:   3'- gUGCGCgCCGCg--GGGCGG-GUa---CGa--CC- -5'
29589 5' -64.5 NC_006151.1 + 50175 0.66 0.545399
Target:  5'- --aGCGCGGCcgGCCgCGCCgGUGUUc- -3'
miRNA:   3'- gugCGCGCCG--CGGgGCGGgUACGAcc -5'
29589 5' -64.5 NC_006151.1 + 117147 0.66 0.545399
Target:  5'- uGCGCGaccaGGCG-CCCGCUguUGCUc- -3'
miRNA:   3'- gUGCGCg---CCGCgGGGCGGguACGAcc -5'
29589 5' -64.5 NC_006151.1 + 18697 0.66 0.545399
Target:  5'- gCGCGgGCGGCGCCggcgucgugacgCCGUCCAcGUa-- -3'
miRNA:   3'- -GUGCgCGCCGCGG------------GGCGGGUaCGacc -5'
29589 5' -64.5 NC_006151.1 + 37223 0.66 0.545399
Target:  5'- cCGC-CGCGGCcuCCCCGgCCCcgGCcccGGa -3'
miRNA:   3'- -GUGcGCGCCGc-GGGGC-GGGuaCGa--CC- -5'
29589 5' -64.5 NC_006151.1 + 39393 0.66 0.545399
Target:  5'- gGCcCGCGGaCGgCCCGgCCGUGggGGa -3'
miRNA:   3'- gUGcGCGCC-GCgGGGCgGGUACgaCC- -5'
29589 5' -64.5 NC_006151.1 + 49266 0.66 0.545399
Target:  5'- gCGCGCcgucguccaGCGGCucuGCgagaCCCGCCCcaaGCUGGu -3'
miRNA:   3'- -GUGCG---------CGCCG---CG----GGGCGGGua-CGACC- -5'
29589 5' -64.5 NC_006151.1 + 58455 0.66 0.545399
Target:  5'- gCGCGCGCGGCGUCgCgGUCCAc----- -3'
miRNA:   3'- -GUGCGCGCCGCGG-GgCGGGUacgacc -5'
29589 5' -64.5 NC_006151.1 + 59520 0.66 0.545399
Target:  5'- gCGCGCGCaGCGCCgCgugaggGCCCAgcgcGCgGGc -3'
miRNA:   3'- -GUGCGCGcCGCGGgG------CGGGUa---CGaCC- -5'
29589 5' -64.5 NC_006151.1 + 65724 0.66 0.545399
Target:  5'- -uCGCGCGGCugcGCgCgGCCCAggaGCcGGg -3'
miRNA:   3'- guGCGCGCCG---CGgGgCGGGUa--CGaCC- -5'
29589 5' -64.5 NC_006151.1 + 11163 0.66 0.545399
Target:  5'- cCugGCGCGGCGCCuagacaCCGUUUcUGCa-- -3'
miRNA:   3'- -GugCGCGCCGCGG------GGCGGGuACGacc -5'
29589 5' -64.5 NC_006151.1 + 136461 0.66 0.545399
Target:  5'- aGCGCGUGcGCGCCgaCCGCgCCGaGaUGGg -3'
miRNA:   3'- gUGCGCGC-CGCGG--GGCG-GGUaCgACC- -5'
29589 5' -64.5 NC_006151.1 + 133673 0.66 0.545399
Target:  5'- gGCGCgGCGGCGCgCC-CCCGagGC-GGu -3'
miRNA:   3'- gUGCG-CGCCGCGgGGcGGGUa-CGaCC- -5'
29589 5' -64.5 NC_006151.1 + 115809 0.66 0.545399
Target:  5'- gCGCGCGCGGaugGCCuuGCgCAUGg--- -3'
miRNA:   3'- -GUGCGCGCCg--CGGggCGgGUACgacc -5'
29589 5' -64.5 NC_006151.1 + 98381 0.66 0.545399
Target:  5'- gCGCGCGCuGCGCCUgGCCUgccGCg-- -3'
miRNA:   3'- -GUGCGCGcCGCGGGgCGGGua-CGacc -5'
29589 5' -64.5 NC_006151.1 + 91111 0.66 0.545399
Target:  5'- gGC-CGCGGCGCCCuuCGCCacgGC-GGc -3'
miRNA:   3'- gUGcGCGCCGCGGG--GCGGguaCGaCC- -5'
29589 5' -64.5 NC_006151.1 + 86423 0.66 0.545399
Target:  5'- gGCGUcccuguccucGCGGCGCCUggCGCCCG-GCgaGGc -3'
miRNA:   3'- gUGCG----------CGCCGCGGG--GCGGGUaCGa-CC- -5'
29589 5' -64.5 NC_006151.1 + 136866 0.66 0.542568
Target:  5'- -cCGCGUGaccgccgucgaggaGCGCCUcgCGCCCcacgGCUGGg -3'
miRNA:   3'- guGCGCGC--------------CGCGGG--GCGGGua--CGACC- -5'
29589 5' -64.5 NC_006151.1 + 117593 0.66 0.535984
Target:  5'- -cCGCGUGGCGCCgCCGCaguagaCCGUGg--- -3'
miRNA:   3'- guGCGCGCCGCGG-GGCG------GGUACgacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.