miRNA display CGI


Results 61 - 80 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29589 5' -64.5 NC_006151.1 + 90701 0.66 0.535984
Target:  5'- gGCG-GCGGaCGCgCCCGCCCc-GCaGGc -3'
miRNA:   3'- gUGCgCGCC-GCG-GGGCGGGuaCGaCC- -5'
29589 5' -64.5 NC_006151.1 + 99335 0.66 0.535984
Target:  5'- gACGCGCaGCGCgCCGUCg--GCUGc -3'
miRNA:   3'- gUGCGCGcCGCGgGGCGGguaCGACc -5'
29589 5' -64.5 NC_006151.1 + 136866 0.66 0.542568
Target:  5'- -cCGCGUGaccgccgucgaggaGCGCCUcgCGCCCcacgGCUGGg -3'
miRNA:   3'- guGCGCGC--------------CGCGGG--GCGGGua--CGACC- -5'
29589 5' -64.5 NC_006151.1 + 137614 0.66 0.535984
Target:  5'- gGCGCGggcggggacccCGGCGCCuCCGCCCucguccGCg-- -3'
miRNA:   3'- gUGCGC-----------GCCGCGG-GGCGGGua----CGacc -5'
29589 5' -64.5 NC_006151.1 + 117593 0.66 0.535984
Target:  5'- -cCGCGUGGCGCCgCCGCaguagaCCGUGg--- -3'
miRNA:   3'- guGCGCGCCGCGG-GGCG------GGUACgacc -5'
29589 5' -64.5 NC_006151.1 + 141750 0.66 0.535984
Target:  5'- gGCGCGgGGCGCg-CGCCCcgG-UGGc -3'
miRNA:   3'- gUGCGCgCCGCGggGCGGGuaCgACC- -5'
29589 5' -64.5 NC_006151.1 + 136328 0.66 0.535984
Target:  5'- cCGCGCGUGGa-CCCCaacCCCAgcgGcCUGGa -3'
miRNA:   3'- -GUGCGCGCCgcGGGGc--GGGUa--C-GACC- -5'
29589 5' -64.5 NC_006151.1 + 128276 0.66 0.535984
Target:  5'- gCGCGCGCaGCGCCgCGCgCAgGUacgGGu -3'
miRNA:   3'- -GUGCGCGcCGCGGgGCGgGUaCGa--CC- -5'
29589 5' -64.5 NC_006151.1 + 118098 0.66 0.535984
Target:  5'- gAgGCGCuGCGCCgCGaCC-UGCUGGc -3'
miRNA:   3'- gUgCGCGcCGCGGgGCgGGuACGACC- -5'
29589 5' -64.5 NC_006151.1 + 103956 0.67 0.471926
Target:  5'- gGCGCucGCGGCGCgCCaGCgCGUcggcgaGCUGGa -3'
miRNA:   3'- gUGCG--CGCCGCGgGG-CGgGUA------CGACC- -5'
29589 5' -64.5 NC_006151.1 + 3137 0.67 0.471926
Target:  5'- gGCGCGgGGCGCCCuCGgCgG-GCUcGGc -3'
miRNA:   3'- gUGCGCgCCGCGGG-GCgGgUaCGA-CC- -5'
29589 5' -64.5 NC_006151.1 + 55234 0.67 0.471926
Target:  5'- gGCGC-CGGCGCgCaGCCgGUGCaGGa -3'
miRNA:   3'- gUGCGcGCCGCGgGgCGGgUACGaCC- -5'
29589 5' -64.5 NC_006151.1 + 66551 0.67 0.471926
Target:  5'- gCGCGCGCGGcCGCgCCGCcguggaCCcgGCg-- -3'
miRNA:   3'- -GUGCGCGCC-GCGgGGCG------GGuaCGacc -5'
29589 5' -64.5 NC_006151.1 + 127488 0.67 0.471926
Target:  5'- aGC-CGCGGa-CCCCGCgCCGgaaGCUGGu -3'
miRNA:   3'- gUGcGCGCCgcGGGGCG-GGUa--CGACC- -5'
29589 5' -64.5 NC_006151.1 + 112618 0.67 0.480851
Target:  5'- gCugGCGCuGGacgaGCCCUGCCgCGUGUg-- -3'
miRNA:   3'- -GugCGCG-CCg---CGGGGCGG-GUACGacc -5'
29589 5' -64.5 NC_006151.1 + 21027 0.67 0.480851
Target:  5'- gACGC-CGGCGCCCCugaagaggacGCCCccgacGCgcgGGg -3'
miRNA:   3'- gUGCGcGCCGCGGGG----------CGGGua---CGa--CC- -5'
29589 5' -64.5 NC_006151.1 + 51350 0.67 0.480851
Target:  5'- cCACG-GCcaGGaccgugaGCaCCgGCCCGUGCUGGa -3'
miRNA:   3'- -GUGCgCG--CCg------CG-GGgCGGGUACGACC- -5'
29589 5' -64.5 NC_006151.1 + 104272 0.67 0.480851
Target:  5'- gGCGCgGCGGCgGgCCCGCCgcUGCaGGc -3'
miRNA:   3'- gUGCG-CGCCG-CgGGGCGGguACGaCC- -5'
29589 5' -64.5 NC_006151.1 + 99592 0.67 0.480851
Target:  5'- nGCG-GCGGCcgaGCgCCGCgCCggGCUGGc -3'
miRNA:   3'- gUGCgCGCCG---CGgGGCG-GGuaCGACC- -5'
29589 5' -64.5 NC_006151.1 + 138158 0.67 0.470151
Target:  5'- gCGCGCGCucgaggccuucguGGCggacgugGCCauggCGCCCGUGCUGcGg -3'
miRNA:   3'- -GUGCGCG-------------CCG-------CGGg---GCGGGUACGAC-C- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.