miRNA display CGI


Results 81 - 100 of 257 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29589 5' -64.5 NC_006151.1 + 99273 0.67 0.453461
Target:  5'- uCACGCGCcgccacuGCGaCCUccucgagCGCgCCGUGCUGGa -3'
miRNA:   3'- -GUGCGCGc------CGC-GGG-------GCG-GGUACGACC- -5'
29589 5' -64.5 NC_006151.1 + 102637 0.67 0.451723
Target:  5'- gCGCGCucgagGCGGCGCUcgaggCCGCCCAcGCcaacuuugacgccgUGGa -3'
miRNA:   3'- -GUGCG-----CGCCGCGG-----GGCGGGUaCG--------------ACC- -5'
29589 5' -64.5 NC_006151.1 + 22764 0.67 0.445669
Target:  5'- gAUGUgGCGGCucuucugcuggGCCUCGCgCaCGUGCUGGg -3'
miRNA:   3'- gUGCG-CGCCG-----------CGGGGCG-G-GUACGACC- -5'
29589 5' -64.5 NC_006151.1 + 139127 0.67 0.445669
Target:  5'- uCACGCGCGccccguGCGCCCuCGUCUucccGCUGu -3'
miRNA:   3'- -GUGCGCGC------CGCGGG-GCGGGua--CGACc -5'
29589 5' -64.5 NC_006151.1 + 102407 0.67 0.463085
Target:  5'- gGCGCGCGucgcGCGgCCCGCgaacgaggCCAUGCaccGGg -3'
miRNA:   3'- gUGCGCGC----CGCgGGGCG--------GGUACGa--CC- -5'
29589 5' -64.5 NC_006151.1 + 104722 0.67 0.463085
Target:  5'- -cUGCGCGGCGCCgUGaCCUAc-CUGGa -3'
miRNA:   3'- guGCGCGCCGCGGgGC-GGGUacGACC- -5'
29589 5' -64.5 NC_006151.1 + 99592 0.67 0.480851
Target:  5'- nGCG-GCGGCcgaGCgCCGCgCCggGCUGGc -3'
miRNA:   3'- gUGCgCGCCG---CGgGGCG-GGuaCGACC- -5'
29589 5' -64.5 NC_006151.1 + 104272 0.67 0.480851
Target:  5'- gGCGCgGCGGCgGgCCCGCCgcUGCaGGc -3'
miRNA:   3'- gUGCG-CGCCG-CgGGGCGGguACGaCC- -5'
29589 5' -64.5 NC_006151.1 + 51350 0.67 0.480851
Target:  5'- cCACG-GCcaGGaccgugaGCaCCgGCCCGUGCUGGa -3'
miRNA:   3'- -GUGCgCG--CCg------CG-GGgCGGGUACGACC- -5'
29589 5' -64.5 NC_006151.1 + 21027 0.67 0.480851
Target:  5'- gACGC-CGGCGCCCCugaagaggacGCCCccgacGCgcgGGg -3'
miRNA:   3'- gUGCGcGCCGCGGGG----------CGGGua---CGa--CC- -5'
29589 5' -64.5 NC_006151.1 + 112618 0.67 0.480851
Target:  5'- gCugGCGCuGGacgaGCCCUGCCgCGUGUg-- -3'
miRNA:   3'- -GugCGCG-CCg---CGGGGCGG-GUACGacc -5'
29589 5' -64.5 NC_006151.1 + 127488 0.67 0.471926
Target:  5'- aGC-CGCGGa-CCCCGCgCCGgaaGCUGGu -3'
miRNA:   3'- gUGcGCGCCgcGGGGCG-GGUa--CGACC- -5'
29589 5' -64.5 NC_006151.1 + 66551 0.67 0.471926
Target:  5'- gCGCGCGCGGcCGCgCCGCcguggaCCcgGCg-- -3'
miRNA:   3'- -GUGCGCGCC-GCGgGGCG------GGuaCGacc -5'
29589 5' -64.5 NC_006151.1 + 55234 0.67 0.471926
Target:  5'- gGCGC-CGGCGCgCaGCCgGUGCaGGa -3'
miRNA:   3'- gUGCGcGCCGCGgGgCGGgUACGaCC- -5'
29589 5' -64.5 NC_006151.1 + 3137 0.67 0.471926
Target:  5'- gGCGCGgGGCGCCCuCGgCgG-GCUcGGc -3'
miRNA:   3'- gUGCGCgCCGCGGG-GCgGgUaCGA-CC- -5'
29589 5' -64.5 NC_006151.1 + 103956 0.67 0.471926
Target:  5'- gGCGCucGCGGCGCgCCaGCgCGUcggcgaGCUGGa -3'
miRNA:   3'- gUGCG--CGCCGCGgGG-CGgGUA------CGACC- -5'
29589 5' -64.5 NC_006151.1 + 138158 0.67 0.470151
Target:  5'- gCGCGCGCucgaggccuucguGGCggacgugGCCauggCGCCCGUGCUGcGg -3'
miRNA:   3'- -GUGCGCG-------------CCG-------CGGg---GCGGGUACGAC-C- -5'
29589 5' -64.5 NC_006151.1 + 97630 0.67 0.469265
Target:  5'- gGCGCGCGGCcaugucguuggugcGCgCCGCCUc--CUGGu -3'
miRNA:   3'- gUGCGCGCCG--------------CGgGGCGGGuacGACC- -5'
29589 5' -64.5 NC_006151.1 + 107551 0.67 0.468379
Target:  5'- -cCGC-CGGCGCCgCCGCCCGccaagcccgcggaGCUGa -3'
miRNA:   3'- guGCGcGCCGCGG-GGCGGGUa------------CGACc -5'
29589 5' -64.5 NC_006151.1 + 137316 0.67 0.463085
Target:  5'- -cCGCGCGGUGCUCgacgCGCUCGcGCUGc -3'
miRNA:   3'- guGCGCGCCGCGGG----GCGGGUaCGACc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.