miRNA display CGI


Results 1 - 20 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29589 5' -64.5 NC_006151.1 + 102949 0.8 0.070964
Target:  5'- gCugGaCGCGGCGCCcgCCGCCCAcgacggcgcgcUGCUGGc -3'
miRNA:   3'- -GugC-GCGCCGCGG--GGCGGGU-----------ACGACC- -5'
29589 5' -64.5 NC_006151.1 + 3697 0.8 0.069184
Target:  5'- gGCGCGCGGCGCUucuucuugcgCCGCUCGggcGCUGGg -3'
miRNA:   3'- gUGCGCGCCGCGG----------GGCGGGUa--CGACC- -5'
29589 5' -64.5 NC_006151.1 + 56345 0.79 0.072788
Target:  5'- aGCGCGCGcGCGCCCCGCCgGcGC-GGa -3'
miRNA:   3'- gUGCGCGC-CGCGGGGCGGgUaCGaCC- -5'
29589 5' -64.5 NC_006151.1 + 85171 0.78 0.089084
Target:  5'- gGCGcCGCgGGCGCCgCCGCCCc-GCUGGg -3'
miRNA:   3'- gUGC-GCG-CCGCGG-GGCGGGuaCGACC- -5'
29589 5' -64.5 NC_006151.1 + 15219 0.78 0.093671
Target:  5'- aCACGCGCcaGCGCCCCucgGCCCccUGCUGGc -3'
miRNA:   3'- -GUGCGCGc-CGCGGGG---CGGGu-ACGACC- -5'
29589 5' -64.5 NC_006151.1 + 71816 0.77 0.098481
Target:  5'- uCGCGCGUGGCGCU--GCCCA-GCUGGa -3'
miRNA:   3'- -GUGCGCGCCGCGGggCGGGUaCGACC- -5'
29589 5' -64.5 NC_006151.1 + 84431 0.76 0.132574
Target:  5'- gCGCGCgGCGGCGCgCgGCCCAUGUccccccgcgccaUGGa -3'
miRNA:   3'- -GUGCG-CGCCGCGgGgCGGGUACG------------ACC- -5'
29589 5' -64.5 NC_006151.1 + 91803 0.76 0.125908
Target:  5'- aUAUGCGCGGgaugcccCGCCCCGCCaCAUGCg-- -3'
miRNA:   3'- -GUGCGCGCC-------GCGGGGCGG-GUACGacc -5'
29589 5' -64.5 NC_006151.1 + 64637 0.76 0.120146
Target:  5'- gGgGCGCGGCGCCCCGCgCAggaaccGCaGGa -3'
miRNA:   3'- gUgCGCGCCGCGGGGCGgGUa-----CGaCC- -5'
29589 5' -64.5 NC_006151.1 + 4049 0.76 0.120146
Target:  5'- gCGgGCGCGG-GCCCCGUCCAcGCUGu -3'
miRNA:   3'- -GUgCGCGCCgCGGGGCGGGUaCGACc -5'
29589 5' -64.5 NC_006151.1 + 139592 0.76 0.123147
Target:  5'- uCGCGCccccccgaGCGGCGgCCCGUCCGggcgcgGCUGGg -3'
miRNA:   3'- -GUGCG--------CGCCGCgGGGCGGGUa-----CGACC- -5'
29589 5' -64.5 NC_006151.1 + 39002 0.76 0.126218
Target:  5'- gCGCGcCGCGGCGCCCCGCuCCGccGCcgcgccgccUGGa -3'
miRNA:   3'- -GUGC-GCGCCGCGGGGCG-GGUa-CG---------ACC- -5'
29589 5' -64.5 NC_006151.1 + 49217 0.76 0.132249
Target:  5'- gGCGCGgGGUccccggcucccacGCCCCGCUCG-GCUGGg -3'
miRNA:   3'- gUGCGCgCCG-------------CGGGGCGGGUaCGACC- -5'
29589 5' -64.5 NC_006151.1 + 39980 0.76 0.132574
Target:  5'- -cCGCG-GGCGCCCCGCcggCCGUGCUcuGGg -3'
miRNA:   3'- guGCGCgCCGCGGGGCG---GGUACGA--CC- -5'
29589 5' -64.5 NC_006151.1 + 136671 0.75 0.142661
Target:  5'- aGCGCGCGGcCGCCgccuucuuCCGCCaCGUGCgGGc -3'
miRNA:   3'- gUGCGCGCC-GCGG--------GGCGG-GUACGaCC- -5'
29589 5' -64.5 NC_006151.1 + 33220 0.75 0.146177
Target:  5'- gCACGCGgGGCGCCCCGgCgGgcgGgaGGg -3'
miRNA:   3'- -GUGCGCgCCGCGGGGCgGgUa--CgaCC- -5'
29589 5' -64.5 NC_006151.1 + 73694 0.75 0.157203
Target:  5'- --gGCGCGGCuCUgCGCCgCGUGCUGGg -3'
miRNA:   3'- gugCGCGCCGcGGgGCGG-GUACGACC- -5'
29589 5' -64.5 NC_006151.1 + 112978 0.75 0.149771
Target:  5'- gACGCGCGcGCGCCgCCgaGCCUGggggGCUGGa -3'
miRNA:   3'- gUGCGCGC-CGCGG-GG--CGGGUa---CGACC- -5'
29589 5' -64.5 NC_006151.1 + 10645 0.75 0.142661
Target:  5'- --gGCGCGGCauCCCCGCCCAggcgGCgGGg -3'
miRNA:   3'- gugCGCGCCGc-GGGGCGGGUa---CGaCC- -5'
29589 5' -64.5 NC_006151.1 + 88455 0.75 0.138883
Target:  5'- gCGCGUGCGGCGCCCgaGCUCGucggccacggugcUGUUGGu -3'
miRNA:   3'- -GUGCGCGCCGCGGGg-CGGGU-------------ACGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.