Results 21 - 40 of 257 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29589 | 5' | -64.5 | NC_006151.1 | + | 100092 | 0.75 | 0.153446 |
Target: 5'- gGCGC-CGGCGCCggcgCCGCCCucGCUGGc -3' miRNA: 3'- gUGCGcGCCGCGG----GGCGGGuaCGACC- -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 10645 | 0.75 | 0.142661 |
Target: 5'- --gGCGCGGCauCCCCGCCCAggcgGCgGGg -3' miRNA: 3'- gugCGCGCCGc-GGGGCGGGUa---CGaCC- -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 97374 | 0.74 | 0.173071 |
Target: 5'- gCGgGCGCGGCgggggcgucgGCCUCGUCCGUGCcgUGGa -3' miRNA: 3'- -GUgCGCGCCG----------CGGGGCGGGUACG--ACC- -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 99687 | 0.74 | 0.164966 |
Target: 5'- uGCGCGCcgacGGCGCCggggagaCGCCCAUGgaGGc -3' miRNA: 3'- gUGCGCG----CCGCGGg------GCGGGUACgaCC- -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 137003 | 0.74 | 0.161042 |
Target: 5'- gCGCGCGCacggcgcugGGCGCCCUGCUCGgccUGCcGGa -3' miRNA: 3'- -GUGCGCG---------CCGCGGGGCGGGU---ACGaCC- -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 39348 | 0.74 | 0.173071 |
Target: 5'- gCGCgGCGCGGCG-CCgGCUCAucgUGCUGGa -3' miRNA: 3'- -GUG-CGCGCCGCgGGgCGGGU---ACGACC- -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 87894 | 0.74 | 0.161042 |
Target: 5'- aCGCGCGgGGCgucacgGCCCCGCCCG-GC-GGu -3' miRNA: 3'- -GUGCGCgCCG------CGGGGCGGGUaCGaCC- -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 136750 | 0.73 | 0.190353 |
Target: 5'- aGCGuCGC-GCGCCUCGCCCcgGCcaUGGg -3' miRNA: 3'- gUGC-GCGcCGCGGGGCGGGuaCG--ACC- -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 113307 | 0.73 | 0.194904 |
Target: 5'- cCGCGCgGUGGaCGCCacgcugggGCCCGUGCUGGc -3' miRNA: 3'- -GUGCG-CGCC-GCGGgg------CGGGUACGACC- -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 49581 | 0.73 | 0.190353 |
Target: 5'- cCGCGCucgcCGGCGCCCCGgCCAgcgcGCUGc -3' miRNA: 3'- -GUGCGc---GCCGCGGGGCgGGUa---CGACc -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 39112 | 0.73 | 0.199082 |
Target: 5'- -cUGCGCcgagcccgccgagGGCGCCCCGCgCCcgGcCUGGg -3' miRNA: 3'- guGCGCG-------------CCGCGGGGCG-GGuaC-GACC- -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 84917 | 0.73 | 0.185895 |
Target: 5'- cCGCGCGCGGCGCCgCCuCCggCGUGCUc- -3' miRNA: 3'- -GUGCGCGCCGCGG-GGcGG--GUACGAcc -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 115130 | 0.73 | 0.214071 |
Target: 5'- aCGCGCGCGuGCGCCUCGgCCA-GCa-- -3' miRNA: 3'- -GUGCGCGC-CGCGGGGCgGGUaCGacc -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 67040 | 0.73 | 0.204293 |
Target: 5'- cCACGCcgaGC-GCGCCaCCGCCUAccUGCUGGc -3' miRNA: 3'- -GUGCG---CGcCGCGG-GGCGGGU--ACGACC- -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 39934 | 0.73 | 0.194904 |
Target: 5'- gACGCcgaGGcCGCCCCGCUgGUGCUGa -3' miRNA: 3'- gUGCGcg-CC-GCGGGGCGGgUACGACc -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 82530 | 0.73 | 0.208644 |
Target: 5'- uGCGCGUGucguugaGCGCCCCcaGCCCGccgaGCUGGa -3' miRNA: 3'- gUGCGCGC-------CGCGGGG--CGGGUa---CGACC- -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 119377 | 0.73 | 0.199551 |
Target: 5'- gGCGUGCGGC-UUCUGCCCGcagcUGCUGGc -3' miRNA: 3'- gUGCGCGCCGcGGGGCGGGU----ACGACC- -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 79092 | 0.73 | 0.185895 |
Target: 5'- gCGCGCGCGagcgaGCGCCCC-UCCGUcgugGCUGGg -3' miRNA: 3'- -GUGCGCGC-----CGCGGGGcGGGUA----CGACC- -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 56566 | 0.72 | 0.234833 |
Target: 5'- -cCGgGCGacGCGCCgCCGCCCGacggGCUGGu -3' miRNA: 3'- guGCgCGC--CGCGG-GGCGGGUa---CGACC- -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 26985 | 0.72 | 0.224248 |
Target: 5'- gCGCaGCGgGGCGCUCUGCUCGggcgagaGCUGGa -3' miRNA: 3'- -GUG-CGCgCCGCGGGGCGGGUa------CGACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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