Results 61 - 80 of 257 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29589 | 5' | -64.5 | NC_006151.1 | + | 99566 | 0.71 | 0.28772 |
Target: 5'- gCGCGCGCGGCGCUgCUGCgCGaGgUGGc -3' miRNA: 3'- -GUGCGCGCCGCGG-GGCGgGUaCgACC- -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 87177 | 0.71 | 0.251493 |
Target: 5'- aCGCGCccGCGGCGCCgCCGCagcUGCUGc -3' miRNA: 3'- -GUGCG--CGCCGCGG-GGCGgguACGACc -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 69629 | 0.71 | 0.275207 |
Target: 5'- -uCGCGguCGGCGUCCCGCgCGUGC-GGc -3' miRNA: 3'- guGCGC--GCCGCGGGGCGgGUACGaCC- -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 67744 | 0.71 | 0.281408 |
Target: 5'- gCACgGCGCGGCgGCCCCGUCgggGUGC-GGc -3' miRNA: 3'- -GUG-CGCGCCG-CGGGGCGGg--UACGaCC- -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 132430 | 0.71 | 0.257259 |
Target: 5'- -uCGuCGCGGCGCgCCUGCgCGUGCaGGu -3' miRNA: 3'- guGC-GCGCCGCG-GGGCGgGUACGaCC- -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 113081 | 0.71 | 0.28772 |
Target: 5'- aGCGCGCGGCcgucGCCgCCGCCaccggggGCgGGg -3' miRNA: 3'- gUGCGCGCCG----CGG-GGCGGgua----CGaCC- -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 107046 | 0.71 | 0.281408 |
Target: 5'- cCugGC-CGGCGagccggCCUGCCuCGUGCUGGu -3' miRNA: 3'- -GugCGcGCCGCg-----GGGCGG-GUACGACC- -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 8366 | 0.7 | 0.314078 |
Target: 5'- gGCGCGaGGC-CCCCGCCCccGggGGg -3' miRNA: 3'- gUGCGCgCCGcGGGGCGGGuaCgaCC- -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 94046 | 0.7 | 0.327927 |
Target: 5'- gCGCGcCGCGGCGUCgCCGCggaaCAgcaucaGCUGGa -3' miRNA: 3'- -GUGC-GCGCCGCGG-GGCGg---GUa-----CGACC- -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 137768 | 0.7 | 0.320947 |
Target: 5'- cCugGCGCGcGUGCUCCaGCaggCCGUGCUGc -3' miRNA: 3'- -GugCGCGC-CGCGGGG-CG---GGUACGACc -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 98118 | 0.7 | 0.320947 |
Target: 5'- gGCGCGCGcGCGCCgaGCCCAcgguuagugUGCccGGc -3' miRNA: 3'- gUGCGCGC-CGCGGggCGGGU---------ACGa-CC- -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 57113 | 0.7 | 0.307321 |
Target: 5'- aGCGCGCGcCGCCgCGCCCG-GC-GGu -3' miRNA: 3'- gUGCGCGCcGCGGgGCGGGUaCGaCC- -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 122832 | 0.7 | 0.318875 |
Target: 5'- -cCGCGCGuGCuacgaccaccacauGUCCaCGCCCAUGCUGc -3' miRNA: 3'- guGCGCGC-CG--------------CGGG-GCGGGUACGACc -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 139556 | 0.7 | 0.327927 |
Target: 5'- aGCGaggaGCGGCGCCCgGUCCGcgagcGcCUGGg -3' miRNA: 3'- gUGCg---CGCCGCGGGgCGGGUa----C-GACC- -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 134760 | 0.7 | 0.300676 |
Target: 5'- gCGCGCGCGGgGCCCgCGgCUUcgGCUccacGGg -3' miRNA: 3'- -GUGCGCGCCgCGGG-GC-GGGuaCGA----CC- -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 115545 | 0.7 | 0.314078 |
Target: 5'- cCACGCGCacGGCGUaCUCGCCCGcggGCgGGc -3' miRNA: 3'- -GUGCGCG--CCGCG-GGGCGGGUa--CGaCC- -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 56312 | 0.7 | 0.294142 |
Target: 5'- -cCGCGCGGUGCCUgaGCCUGggccggugGCUGGn -3' miRNA: 3'- guGCGCGCCGCGGGg-CGGGUa-------CGACC- -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 20223 | 0.7 | 0.300676 |
Target: 5'- -cCGCGCaGGCGaCCCCGCCCAagaagaucaGgaGGa -3' miRNA: 3'- guGCGCG-CCGC-GGGGCGGGUa--------CgaCC- -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 83260 | 0.69 | 0.33502 |
Target: 5'- uCGCGCcaGCGGCGCCCCgaGCUCAgguagcgcgacgUGUUGa -3' miRNA: 3'- -GUGCG--CGCCGCGGGG--CGGGU------------ACGACc -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 61436 | 0.69 | 0.340051 |
Target: 5'- cCGC-CGCGGCG-CCCGCCCgcguccgccgccauGUGCgGGc -3' miRNA: 3'- -GUGcGCGCCGCgGGGCGGG--------------UACGaCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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