Results 81 - 100 of 257 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29589 | 5' | -64.5 | NC_006151.1 | + | 86720 | 0.69 | 0.349538 |
Target: 5'- gCugGuCGCGGCGCgCCGCCgcgaggccggCGUGCgcGGa -3' miRNA: 3'- -GugC-GCGCCGCGgGGCGG----------GUACGa-CC- -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 121506 | 0.69 | 0.372144 |
Target: 5'- gACaUG-GGCGCCCCGCCCGagaagcgGCUGa -3' miRNA: 3'- gUGcGCgCCGCGGGGCGGGUa------CGACc -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 54399 | 0.69 | 0.33502 |
Target: 5'- gCGCGCGCGGC-CUCgGCgCCGaggcGCUGGc -3' miRNA: 3'- -GUGCGCGCCGcGGGgCG-GGUa---CGACC- -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 35866 | 0.69 | 0.3645 |
Target: 5'- cCGCGCuCGGCGCCCgGCCUc-GCUcaGGc -3' miRNA: 3'- -GUGCGcGCCGCGGGgCGGGuaCGA--CC- -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 84512 | 0.69 | 0.356964 |
Target: 5'- aGCGCGCGccacuucaucGCGCCCCcguucCCCGUGggcuuCUGGg -3' miRNA: 3'- gUGCGCGC----------CGCGGGGc----GGGUAC-----GACC- -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 83260 | 0.69 | 0.33502 |
Target: 5'- uCGCGCcaGCGGCGCCCCgaGCUCAgguagcgcgacgUGUUGa -3' miRNA: 3'- -GUGCG--CGCCGCGGGG--CGGGU------------ACGACc -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 61667 | 0.69 | 0.342224 |
Target: 5'- cCGCuCGUGGC-CCCCGCCCuguuuCUGGa -3' miRNA: 3'- -GUGcGCGCCGcGGGGCGGGuac--GACC- -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 102815 | 0.69 | 0.349538 |
Target: 5'- gGCGCGCaguacaGCGCCaaGgCCAUGCUGa -3' miRNA: 3'- gUGCGCGc-----CGCGGggCgGGUACGACc -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 21976 | 0.69 | 0.372144 |
Target: 5'- --gGUGCGGCGCCggcagCGCCCAaagaucUGcCUGGg -3' miRNA: 3'- gugCGCGCCGCGGg----GCGGGU------AC-GACC- -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 103679 | 0.69 | 0.362984 |
Target: 5'- gCGCGCGCGGCgggggugcugcgcGCCgCCGuggagcaCCCGgaGCUGGg -3' miRNA: 3'- -GUGCGCGCCG-------------CGG-GGC-------GGGUa-CGACC- -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 132377 | 0.69 | 0.33288 |
Target: 5'- gGCGCGCGacgucgcgguaguaGCGCCCgCGCaCCAgcUGCcGGa -3' miRNA: 3'- gUGCGCGC--------------CGCGGG-GCG-GGU--ACGaCC- -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 8126 | 0.69 | 0.33502 |
Target: 5'- --aGCGCGGa-CCCCGCCCgGUGggGGg -3' miRNA: 3'- gugCGCGCCgcGGGGCGGG-UACgaCC- -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 136942 | 0.69 | 0.342224 |
Target: 5'- gGCGcCGaCGGCGCcguCCUGCgCCGccUGCUGGa -3' miRNA: 3'- gUGC-GC-GCCGCG---GGGCG-GGU--ACGACC- -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 119527 | 0.69 | 0.349538 |
Target: 5'- -cCGCGCcucGCGCCCCGCCUgcGCg-- -3' miRNA: 3'- guGCGCGc--CGCGGGGCGGGuaCGacc -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 106368 | 0.69 | 0.356216 |
Target: 5'- aCGCGgGCGcGCGCCCgccgcggCGCCCGcUGCgcgacGGg -3' miRNA: 3'- -GUGCgCGC-CGCGGG-------GCGGGU-ACGa----CC- -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 91576 | 0.69 | 0.356964 |
Target: 5'- gGCGCGCGcGUGCUCCagguGCUCGUcGCUGa -3' miRNA: 3'- gUGCGCGC-CGCGGGG----CGGGUA-CGACc -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 119048 | 0.68 | 0.379898 |
Target: 5'- gACG-GCGGCGCCgcggCCGCCUccGCgGGc -3' miRNA: 3'- gUGCgCGCCGCGG----GGCGGGuaCGaCC- -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 58659 | 0.68 | 0.376783 |
Target: 5'- aGgGCGCGGCGCagggccgccaugaCCGCgCCGUGCg-- -3' miRNA: 3'- gUgCGCGCCGCGg------------GGCG-GGUACGacc -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 119991 | 0.68 | 0.379898 |
Target: 5'- cCugGCGCGGCGCaCgCUGCUggcgGUGCUGc -3' miRNA: 3'- -GugCGCGCCGCG-G-GGCGGg---UACGACc -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 81389 | 0.68 | 0.379898 |
Target: 5'- cCGCGcCGCGGCGCCCagguugGCCag-GgUGGc -3' miRNA: 3'- -GUGC-GCGCCGCGGGg-----CGGguaCgACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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