miRNA display CGI


Results 101 - 120 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29589 5' -64.5 NC_006151.1 + 103393 0.68 0.428625
Target:  5'- gCGCGCGCugcugGGCGaCUuuGCCac-GCUGGg -3'
miRNA:   3'- -GUGCGCG-----CCGC-GGggCGGguaCGACC- -5'
29589 5' -64.5 NC_006151.1 + 2452 0.68 0.428625
Target:  5'- cCGCaGCGgGGCGCCgaGCCCccagcgGUUGGc -3'
miRNA:   3'- -GUG-CGCgCCGCGGggCGGGua----CGACC- -5'
29589 5' -64.5 NC_006151.1 + 129828 0.68 0.428625
Target:  5'- aGCGCGCGGCGgCguaGCCCAgcgacacgGcCUGGc -3'
miRNA:   3'- gUGCGCGCCGCgGgg-CGGGUa-------C-GACC- -5'
29589 5' -64.5 NC_006151.1 + 87450 0.68 0.428625
Target:  5'- cCGC-CGCGGcCGcCCCCGCUCcgGCUc- -3'
miRNA:   3'- -GUGcGCGCC-GC-GGGGCGGGuaCGAcc -5'
29589 5' -64.5 NC_006151.1 + 81226 0.68 0.428625
Target:  5'- gGCGCGUgaacacgaagcuGGCGcCCCCGCgCAgggGCaGGg -3'
miRNA:   3'- gUGCGCG------------CCGC-GGGGCGgGUa--CGaCC- -5'
29589 5' -64.5 NC_006151.1 + 37130 0.68 0.428625
Target:  5'- --gGCcCGGCGCCCCacucGCCCGcGCcGGg -3'
miRNA:   3'- gugCGcGCCGCGGGG----CGGGUaCGaCC- -5'
29589 5' -64.5 NC_006151.1 + 82249 0.68 0.428625
Target:  5'- gACGCGCaGGCcgaggaagGCCUCGCCCA-GCg-- -3'
miRNA:   3'- gUGCGCG-CCG--------CGGGGCGGGUaCGacc -5'
29589 5' -64.5 NC_006151.1 + 58659 0.68 0.376783
Target:  5'- aGgGCGCGGCGCagggccgccaugaCCGCgCCGUGCg-- -3'
miRNA:   3'- gUgCGCGCCGCGg------------GGCG-GGUACGacc -5'
29589 5' -64.5 NC_006151.1 + 107608 0.68 0.395725
Target:  5'- -cCGC-CGGCGCCgCCGCCCGccaaGCccgUGGa -3'
miRNA:   3'- guGCGcGCCGCGG-GGCGGGUa---CG---ACC- -5'
29589 5' -64.5 NC_006151.1 + 103308 0.68 0.395725
Target:  5'- -uCGCGCGGCGCgaCGCCgAgcugcgcacGCUGGu -3'
miRNA:   3'- guGCGCGCCGCGggGCGGgUa--------CGACC- -5'
29589 5' -64.5 NC_006151.1 + 119991 0.68 0.379898
Target:  5'- cCugGCGCGGCGCaCgCUGCUggcgGUGCUGc -3'
miRNA:   3'- -GugCGCGCCGCG-G-GGCGGg---UACGACc -5'
29589 5' -64.5 NC_006151.1 + 106511 0.68 0.386968
Target:  5'- gCGCGCGCcgugccgGGCGCgCUgGCcaccuucaCCGUGCUGGc -3'
miRNA:   3'- -GUGCGCG-------CCGCG-GGgCG--------GGUACGACC- -5'
29589 5' -64.5 NC_006151.1 + 64294 0.68 0.387758
Target:  5'- -cCGCGUugucgGGCGUgCCGCagcgcgCCGUGCUGGc -3'
miRNA:   3'- guGCGCG-----CCGCGgGGCG------GGUACGACC- -5'
29589 5' -64.5 NC_006151.1 + 84611 0.68 0.395725
Target:  5'- aACGCGCGcCGCCgcgcggCCGCCgCGgcGCUGGa -3'
miRNA:   3'- gUGCGCGCcGCGG------GGCGG-GUa-CGACC- -5'
29589 5' -64.5 NC_006151.1 + 142261 0.68 0.379898
Target:  5'- uCGCG-GCGaggaGCGCCCCGUCCcgGC-GGc -3'
miRNA:   3'- -GUGCgCGC----CGCGGGGCGGGuaCGaCC- -5'
29589 5' -64.5 NC_006151.1 + 81389 0.68 0.379898
Target:  5'- cCGCGcCGCGGCGCCCagguugGCCag-GgUGGc -3'
miRNA:   3'- -GUGC-GCGCCGCGGGg-----CGGguaCgACC- -5'
29589 5' -64.5 NC_006151.1 + 103762 0.68 0.387758
Target:  5'- gCGCGcCGCGGCGCUgCGCgagUCGgagcGCUGGc -3'
miRNA:   3'- -GUGC-GCGCCGCGGgGCG---GGUa---CGACC- -5'
29589 5' -64.5 NC_006151.1 + 9040 0.68 0.387758
Target:  5'- cCGC-CGgGGCGCCCCGC--GUGCUccGGg -3'
miRNA:   3'- -GUGcGCgCCGCGGGGCGggUACGA--CC- -5'
29589 5' -64.5 NC_006151.1 + 64607 0.68 0.395725
Target:  5'- gUACGCcaGCGGCGCCgCGCCgCcgGCc-- -3'
miRNA:   3'- -GUGCG--CGCCGCGGgGCGG-GuaCGacc -5'
29589 5' -64.5 NC_006151.1 + 52439 0.68 0.387758
Target:  5'- gCACGCGCaGCGCCgCCGCCgugacgGC-GGc -3'
miRNA:   3'- -GUGCGCGcCGCGG-GGCGGgua---CGaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.