miRNA display CGI


Results 21 - 40 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29589 5' -64.5 NC_006151.1 + 92140 0.75 0.156823
Target:  5'- uCGCGCGCGGCGCCaaggccaucauggCCGCggCCGUGCg-- -3'
miRNA:   3'- -GUGCGCGCCGCGG-------------GGCG--GGUACGacc -5'
29589 5' -64.5 NC_006151.1 + 73694 0.75 0.157203
Target:  5'- --gGCGCGGCuCUgCGCCgCGUGCUGGg -3'
miRNA:   3'- gugCGCGCCGcGGgGCGG-GUACGACC- -5'
29589 5' -64.5 NC_006151.1 + 137003 0.74 0.161042
Target:  5'- gCGCGCGCacggcgcugGGCGCCCUGCUCGgccUGCcGGa -3'
miRNA:   3'- -GUGCGCG---------CCGCGGGGCGGGU---ACGaCC- -5'
29589 5' -64.5 NC_006151.1 + 87894 0.74 0.161042
Target:  5'- aCGCGCGgGGCgucacgGCCCCGCCCG-GC-GGu -3'
miRNA:   3'- -GUGCGCgCCG------CGGGGCGGGUaCGaCC- -5'
29589 5' -64.5 NC_006151.1 + 99687 0.74 0.164966
Target:  5'- uGCGCGCcgacGGCGCCggggagaCGCCCAUGgaGGc -3'
miRNA:   3'- gUGCGCG----CCGCGGg------GCGGGUACgaCC- -5'
29589 5' -64.5 NC_006151.1 + 39348 0.74 0.173071
Target:  5'- gCGCgGCGCGGCG-CCgGCUCAucgUGCUGGa -3'
miRNA:   3'- -GUG-CGCGCCGCgGGgCGGGU---ACGACC- -5'
29589 5' -64.5 NC_006151.1 + 97374 0.74 0.173071
Target:  5'- gCGgGCGCGGCgggggcgucgGCCUCGUCCGUGCcgUGGa -3'
miRNA:   3'- -GUgCGCGCCG----------CGGGGCGGGUACG--ACC- -5'
29589 5' -64.5 NC_006151.1 + 84917 0.73 0.185895
Target:  5'- cCGCGCGCGGCGCCgCCuCCggCGUGCUc- -3'
miRNA:   3'- -GUGCGCGCCGCGG-GGcGG--GUACGAcc -5'
29589 5' -64.5 NC_006151.1 + 79092 0.73 0.185895
Target:  5'- gCGCGCGCGagcgaGCGCCCC-UCCGUcgugGCUGGg -3'
miRNA:   3'- -GUGCGCGC-----CGCGGGGcGGGUA----CGACC- -5'
29589 5' -64.5 NC_006151.1 + 136750 0.73 0.190353
Target:  5'- aGCGuCGC-GCGCCUCGCCCcgGCcaUGGg -3'
miRNA:   3'- gUGC-GCGcCGCGGGGCGGGuaCG--ACC- -5'
29589 5' -64.5 NC_006151.1 + 49581 0.73 0.190353
Target:  5'- cCGCGCucgcCGGCGCCCCGgCCAgcgcGCUGc -3'
miRNA:   3'- -GUGCGc---GCCGCGGGGCgGGUa---CGACc -5'
29589 5' -64.5 NC_006151.1 + 113307 0.73 0.194904
Target:  5'- cCGCGCgGUGGaCGCCacgcugggGCCCGUGCUGGc -3'
miRNA:   3'- -GUGCG-CGCC-GCGGgg------CGGGUACGACC- -5'
29589 5' -64.5 NC_006151.1 + 39934 0.73 0.194904
Target:  5'- gACGCcgaGGcCGCCCCGCUgGUGCUGa -3'
miRNA:   3'- gUGCGcg-CC-GCGGGGCGGgUACGACc -5'
29589 5' -64.5 NC_006151.1 + 39112 0.73 0.199082
Target:  5'- -cUGCGCcgagcccgccgagGGCGCCCCGCgCCcgGcCUGGg -3'
miRNA:   3'- guGCGCG-------------CCGCGGGGCG-GGuaC-GACC- -5'
29589 5' -64.5 NC_006151.1 + 119377 0.73 0.199551
Target:  5'- gGCGUGCGGC-UUCUGCCCGcagcUGCUGGc -3'
miRNA:   3'- gUGCGCGCCGcGGGGCGGGU----ACGACC- -5'
29589 5' -64.5 NC_006151.1 + 67040 0.73 0.204293
Target:  5'- cCACGCcgaGC-GCGCCaCCGCCUAccUGCUGGc -3'
miRNA:   3'- -GUGCG---CGcCGCGG-GGCGGGU--ACGACC- -5'
29589 5' -64.5 NC_006151.1 + 82530 0.73 0.208644
Target:  5'- uGCGCGUGucguugaGCGCCCCcaGCCCGccgaGCUGGa -3'
miRNA:   3'- gUGCGCGC-------CGCGGGG--CGGGUa---CGACC- -5'
29589 5' -64.5 NC_006151.1 + 115130 0.73 0.214071
Target:  5'- aCGCGCGCGuGCGCCUCGgCCA-GCa-- -3'
miRNA:   3'- -GUGCGCGC-CGCGGGGCgGGUaCGacc -5'
29589 5' -64.5 NC_006151.1 + 102745 0.72 0.219109
Target:  5'- aGCGCGCGGCcaaGCUgCCGCgCAaGCUGGc -3'
miRNA:   3'- gUGCGCGCCG---CGG-GGCGgGUaCGACC- -5'
29589 5' -64.5 NC_006151.1 + 26985 0.72 0.224248
Target:  5'- gCGCaGCGgGGCGCUCUGCUCGggcgagaGCUGGa -3'
miRNA:   3'- -GUG-CGCgCCGCGGGGCGGGUa------CGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.