miRNA display CGI


Results 41 - 60 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29589 5' -64.5 NC_006151.1 + 15050 0.72 0.234833
Target:  5'- gGCGCGCGGgGCCCCggcGCCUucUGCgcGGc -3'
miRNA:   3'- gUGCGCGCCgCGGGG---CGGGu-ACGa-CC- -5'
29589 5' -64.5 NC_006151.1 + 56566 0.72 0.234833
Target:  5'- -cCGgGCGacGCGCCgCCGCCCGacggGCUGGu -3'
miRNA:   3'- guGCgCGC--CGCGG-GGCGGGUa---CGACC- -5'
29589 5' -64.5 NC_006151.1 + 130493 0.72 0.234833
Target:  5'- aGCGCGCGGCGCCacaCGCCgCGcGuCUcGGg -3'
miRNA:   3'- gUGCGCGCCGCGGg--GCGG-GUaC-GA-CC- -5'
29589 5' -64.5 NC_006151.1 + 72033 0.72 0.240281
Target:  5'- cCGCGCG-GGCGCCCCGCCgc-GCa-- -3'
miRNA:   3'- -GUGCGCgCCGCGGGGCGGguaCGacc -5'
29589 5' -64.5 NC_006151.1 + 58392 0.72 0.240281
Target:  5'- --aGCGCGGCGCagCCGgCCAUggcgcgcaGCUGGg -3'
miRNA:   3'- gugCGCGCCGCGg-GGCgGGUA--------CGACC- -5'
29589 5' -64.5 NC_006151.1 + 123762 0.72 0.245274
Target:  5'- uUugGCGCGG-GCCCCgggggcaucgGCCCGggcaccacggcggUGCUGGc -3'
miRNA:   3'- -GugCGCGCCgCGGGG----------CGGGU-------------ACGACC- -5'
29589 5' -64.5 NC_006151.1 + 96387 0.72 0.245834
Target:  5'- gCGCGCGCGGUGCCggcgcacggcggCCGCCaccGCgGGg -3'
miRNA:   3'- -GUGCGCGCCGCGG------------GGCGGguaCGaCC- -5'
29589 5' -64.5 NC_006151.1 + 142944 0.72 0.245834
Target:  5'- aCACGCGCGccCGCCCuCGCCCAUcGCc-- -3'
miRNA:   3'- -GUGCGCGCc-GCGGG-GCGGGUA-CGacc -5'
29589 5' -64.5 NC_006151.1 + 100643 0.71 0.249784
Target:  5'- -cCGCGCuGCGCCgCGCCgucgacgagcgcggCGUGCUGGc -3'
miRNA:   3'- guGCGCGcCGCGGgGCGG--------------GUACGACC- -5'
29589 5' -64.5 NC_006151.1 + 87177 0.71 0.251493
Target:  5'- aCGCGCccGCGGCGCCgCCGCagcUGCUGc -3'
miRNA:   3'- -GUGCG--CGCCGCGG-GGCGgguACGACc -5'
29589 5' -64.5 NC_006151.1 + 132430 0.71 0.257259
Target:  5'- -uCGuCGCGGCGCgCCUGCgCGUGCaGGu -3'
miRNA:   3'- guGC-GCGCCGCG-GGGCGgGUACGaCC- -5'
29589 5' -64.5 NC_006151.1 + 99091 0.71 0.257259
Target:  5'- --gGCGCGGCGCCUgCGCacggaccagggCGUGCUGGc -3'
miRNA:   3'- gugCGCGCCGCGGG-GCGg----------GUACGACC- -5'
29589 5' -64.5 NC_006151.1 + 32880 0.71 0.257259
Target:  5'- cCGCGCGgGGgGCCCCcuccugucGCCUGUcGUUGGa -3'
miRNA:   3'- -GUGCGCgCCgCGGGG--------CGGGUA-CGACC- -5'
29589 5' -64.5 NC_006151.1 + 123850 0.71 0.263133
Target:  5'- uGCGCGgGGCGCCgUCGCgCUAgcgcugcugcUGCUGGc -3'
miRNA:   3'- gUGCGCgCCGCGG-GGCG-GGU----------ACGACC- -5'
29589 5' -64.5 NC_006151.1 + 117786 0.71 0.263133
Target:  5'- cCGgGCGgGGCGCCaCGCCCGgcgggGCgGGg -3'
miRNA:   3'- -GUgCGCgCCGCGGgGCGGGUa----CGaCC- -5'
29589 5' -64.5 NC_006151.1 + 137076 0.71 0.275207
Target:  5'- gCugGCGCaccGGCGCCagGCCUucgcgGUGCUGGc -3'
miRNA:   3'- -GugCGCG---CCGCGGggCGGG-----UACGACC- -5'
29589 5' -64.5 NC_006151.1 + 104569 0.71 0.275207
Target:  5'- gGCGCGCGGCGCgCgGa-CGUGCUGc -3'
miRNA:   3'- gUGCGCGCCGCGgGgCggGUACGACc -5'
29589 5' -64.5 NC_006151.1 + 69629 0.71 0.275207
Target:  5'- -uCGCGguCGGCGUCCCGCgCGUGC-GGc -3'
miRNA:   3'- guGCGC--GCCGCGGGGCGgGUACGaCC- -5'
29589 5' -64.5 NC_006151.1 + 103538 0.71 0.281408
Target:  5'- gGCGCGCuggugGGCGCCgggcagCCGCUCGgggcGCUGGu -3'
miRNA:   3'- gUGCGCG-----CCGCGG------GGCGGGUa---CGACC- -5'
29589 5' -64.5 NC_006151.1 + 136414 0.71 0.281408
Target:  5'- cUACGCGCGGgGCCCCGCggcgGCg-- -3'
miRNA:   3'- -GUGCGCGCCgCGGGGCGgguaCGacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.