miRNA display CGI


Results 61 - 80 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29589 5' -64.5 NC_006151.1 + 67744 0.71 0.281408
Target:  5'- gCACgGCGCGGCgGCCCCGUCgggGUGC-GGc -3'
miRNA:   3'- -GUG-CGCGCCG-CGGGGCGGg--UACGaCC- -5'
29589 5' -64.5 NC_006151.1 + 136414 0.71 0.281408
Target:  5'- cUACGCGCGGgGCCCCGCggcgGCg-- -3'
miRNA:   3'- -GUGCGCGCCgCGGGGCGgguaCGacc -5'
29589 5' -64.5 NC_006151.1 + 77944 0.71 0.287084
Target:  5'- gGCGCGCGGC-CCCCacgcugagcgugcGCCCGcGCcGGu -3'
miRNA:   3'- gUGCGCGCCGcGGGG-------------CGGGUaCGaCC- -5'
29589 5' -64.5 NC_006151.1 + 113081 0.71 0.28772
Target:  5'- aGCGCGCGGCcgucGCCgCCGCCaccggggGCgGGg -3'
miRNA:   3'- gUGCGCGCCG----CGG-GGCGGgua----CGaCC- -5'
29589 5' -64.5 NC_006151.1 + 56454 0.71 0.28772
Target:  5'- gACGCGCGuGCuGCCCCacuaccccaucGCCCAgcgccUGCUGu -3'
miRNA:   3'- gUGCGCGC-CG-CGGGG-----------CGGGU-----ACGACc -5'
29589 5' -64.5 NC_006151.1 + 99566 0.71 0.28772
Target:  5'- gCGCGCGCGGCGCUgCUGCgCGaGgUGGc -3'
miRNA:   3'- -GUGCGCGCCGCGG-GGCGgGUaCgACC- -5'
29589 5' -64.5 NC_006151.1 + 40251 0.71 0.28772
Target:  5'- --aGCGgGGCGCCCCcucgGCCCG-GCcGGa -3'
miRNA:   3'- gugCGCgCCGCGGGG----CGGGUaCGaCC- -5'
29589 5' -64.5 NC_006151.1 + 56312 0.7 0.294142
Target:  5'- -cCGCGCGGUGCCUgaGCCUGggccggugGCUGGn -3'
miRNA:   3'- guGCGCGCCGCGGGg-CGGGUa-------CGACC- -5'
29589 5' -64.5 NC_006151.1 + 20223 0.7 0.300676
Target:  5'- -cCGCGCaGGCGaCCCCGCCCAagaagaucaGgaGGa -3'
miRNA:   3'- guGCGCG-CCGC-GGGGCGGGUa--------CgaCC- -5'
29589 5' -64.5 NC_006151.1 + 134760 0.7 0.300676
Target:  5'- gCGCGCGCGGgGCCCgCGgCUUcgGCUccacGGg -3'
miRNA:   3'- -GUGCGCGCCgCGGG-GC-GGGuaCGA----CC- -5'
29589 5' -64.5 NC_006151.1 + 57113 0.7 0.307321
Target:  5'- aGCGCGCGcCGCCgCGCCCG-GC-GGu -3'
miRNA:   3'- gUGCGCGCcGCGGgGCGGGUaCGaCC- -5'
29589 5' -64.5 NC_006151.1 + 115545 0.7 0.314078
Target:  5'- cCACGCGCacGGCGUaCUCGCCCGcggGCgGGc -3'
miRNA:   3'- -GUGCGCG--CCGCG-GGGCGGGUa--CGaCC- -5'
29589 5' -64.5 NC_006151.1 + 8366 0.7 0.314078
Target:  5'- gGCGCGaGGC-CCCCGCCCccGggGGg -3'
miRNA:   3'- gUGCGCgCCGcGGGGCGGGuaCgaCC- -5'
29589 5' -64.5 NC_006151.1 + 122832 0.7 0.318875
Target:  5'- -cCGCGCGuGCuacgaccaccacauGUCCaCGCCCAUGCUGc -3'
miRNA:   3'- guGCGCGC-CG--------------CGGG-GCGGGUACGACc -5'
29589 5' -64.5 NC_006151.1 + 98118 0.7 0.320947
Target:  5'- gGCGCGCGcGCGCCgaGCCCAcgguuagugUGCccGGc -3'
miRNA:   3'- gUGCGCGC-CGCGGggCGGGU---------ACGa-CC- -5'
29589 5' -64.5 NC_006151.1 + 137768 0.7 0.320947
Target:  5'- cCugGCGCGcGUGCUCCaGCaggCCGUGCUGc -3'
miRNA:   3'- -GugCGCGC-CGCGGGG-CG---GGUACGACc -5'
29589 5' -64.5 NC_006151.1 + 139556 0.7 0.327927
Target:  5'- aGCGaggaGCGGCGCCCgGUCCGcgagcGcCUGGg -3'
miRNA:   3'- gUGCg---CGCCGCGGGgCGGGUa----C-GACC- -5'
29589 5' -64.5 NC_006151.1 + 94046 0.7 0.327927
Target:  5'- gCGCGcCGCGGCGUCgCCGCggaaCAgcaucaGCUGGa -3'
miRNA:   3'- -GUGC-GCGCCGCGG-GGCGg---GUa-----CGACC- -5'
29589 5' -64.5 NC_006151.1 + 132377 0.69 0.33288
Target:  5'- gGCGCGCGacgucgcgguaguaGCGCCCgCGCaCCAgcUGCcGGa -3'
miRNA:   3'- gUGCGCGC--------------CGCGGG-GCG-GGU--ACGaCC- -5'
29589 5' -64.5 NC_006151.1 + 8126 0.69 0.33502
Target:  5'- --aGCGCGGa-CCCCGCCCgGUGggGGg -3'
miRNA:   3'- gugCGCGCCgcGGGGCGGG-UACgaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.