miRNA display CGI


Results 81 - 100 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29589 5' -64.5 NC_006151.1 + 83260 0.69 0.33502
Target:  5'- uCGCGCcaGCGGCGCCCCgaGCUCAgguagcgcgacgUGUUGa -3'
miRNA:   3'- -GUGCG--CGCCGCGGGG--CGGGU------------ACGACc -5'
29589 5' -64.5 NC_006151.1 + 8126 0.69 0.33502
Target:  5'- --aGCGCGGa-CCCCGCCCgGUGggGGg -3'
miRNA:   3'- gugCGCGCCgcGGGGCGGG-UACgaCC- -5'
29589 5' -64.5 NC_006151.1 + 61436 0.69 0.340051
Target:  5'- cCGC-CGCGGCG-CCCGCCCgcguccgccgccauGUGCgGGc -3'
miRNA:   3'- -GUGcGCGCCGCgGGGCGGG--------------UACGaCC- -5'
29589 5' -64.5 NC_006151.1 + 61667 0.69 0.342224
Target:  5'- cCGCuCGUGGC-CCCCGCCCuguuuCUGGa -3'
miRNA:   3'- -GUGcGCGCCGcGGGGCGGGuac--GACC- -5'
29589 5' -64.5 NC_006151.1 + 136942 0.69 0.342224
Target:  5'- gGCGcCGaCGGCGCcguCCUGCgCCGccUGCUGGa -3'
miRNA:   3'- gUGC-GC-GCCGCG---GGGCG-GGU--ACGACC- -5'
29589 5' -64.5 NC_006151.1 + 102815 0.69 0.349538
Target:  5'- gGCGCGCaguacaGCGCCaaGgCCAUGCUGa -3'
miRNA:   3'- gUGCGCGc-----CGCGGggCgGGUACGACc -5'
29589 5' -64.5 NC_006151.1 + 86720 0.69 0.349538
Target:  5'- gCugGuCGCGGCGCgCCGCCgcgaggccggCGUGCgcGGa -3'
miRNA:   3'- -GugC-GCGCCGCGgGGCGG----------GUACGa-CC- -5'
29589 5' -64.5 NC_006151.1 + 119527 0.69 0.349538
Target:  5'- -cCGCGCcucGCGCCCCGCCUgcGCg-- -3'
miRNA:   3'- guGCGCGc--CGCGGGGCGGGuaCGacc -5'
29589 5' -64.5 NC_006151.1 + 106368 0.69 0.356216
Target:  5'- aCGCGgGCGcGCGCCCgccgcggCGCCCGcUGCgcgacGGg -3'
miRNA:   3'- -GUGCgCGC-CGCGGG-------GCGGGU-ACGa----CC- -5'
29589 5' -64.5 NC_006151.1 + 91576 0.69 0.356964
Target:  5'- gGCGCGCGcGUGCUCCagguGCUCGUcGCUGa -3'
miRNA:   3'- gUGCGCGC-CGCGGGG----CGGGUA-CGACc -5'
29589 5' -64.5 NC_006151.1 + 84512 0.69 0.356964
Target:  5'- aGCGCGCGccacuucaucGCGCCCCcguucCCCGUGggcuuCUGGg -3'
miRNA:   3'- gUGCGCGC----------CGCGGGGc----GGGUAC-----GACC- -5'
29589 5' -64.5 NC_006151.1 + 103679 0.69 0.362984
Target:  5'- gCGCGCGCGGCgggggugcugcgcGCCgCCGuggagcaCCCGgaGCUGGg -3'
miRNA:   3'- -GUGCGCGCCG-------------CGG-GGC-------GGGUa-CGACC- -5'
29589 5' -64.5 NC_006151.1 + 35866 0.69 0.3645
Target:  5'- cCGCGCuCGGCGCCCgGCCUc-GCUcaGGc -3'
miRNA:   3'- -GUGCGcGCCGCGGGgCGGGuaCGA--CC- -5'
29589 5' -64.5 NC_006151.1 + 21976 0.69 0.372144
Target:  5'- --gGUGCGGCGCCggcagCGCCCAaagaucUGcCUGGg -3'
miRNA:   3'- gugCGCGCCGCGGg----GCGGGU------AC-GACC- -5'
29589 5' -64.5 NC_006151.1 + 121506 0.69 0.372144
Target:  5'- gACaUG-GGCGCCCCGCCCGagaagcgGCUGa -3'
miRNA:   3'- gUGcGCgCCGCGGGGCGGGUa------CGACc -5'
29589 5' -64.5 NC_006151.1 + 105751 0.69 0.372144
Target:  5'- aGCGCGUGGCGgCgCGCCUggGCg-- -3'
miRNA:   3'- gUGCGCGCCGCgGgGCGGGuaCGacc -5'
29589 5' -64.5 NC_006151.1 + 58659 0.68 0.376783
Target:  5'- aGgGCGCGGCGCagggccgccaugaCCGCgCCGUGCg-- -3'
miRNA:   3'- gUgCGCGCCGCGg------------GGCG-GGUACGacc -5'
29589 5' -64.5 NC_006151.1 + 112674 0.68 0.379898
Target:  5'- --aGCGCucGCugGCCCCGCCCugGCUGGc -3'
miRNA:   3'- gugCGCGc-CG--CGGGGCGGGuaCGACC- -5'
29589 5' -64.5 NC_006151.1 + 9651 0.68 0.379898
Target:  5'- gAgGCGCGGCGCCCCGCgcuuccccuUCccGCUu- -3'
miRNA:   3'- gUgCGCGCCGCGGGGCG---------GGuaCGAcc -5'
29589 5' -64.5 NC_006151.1 + 119048 0.68 0.379898
Target:  5'- gACG-GCGGCGCCgcggCCGCCUccGCgGGc -3'
miRNA:   3'- gUGCgCGCCGCGG----GGCGGGuaCGaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.