miRNA display CGI


Results 101 - 120 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29589 5' -64.5 NC_006151.1 + 112674 0.68 0.379898
Target:  5'- --aGCGCucGCugGCCCCGCCCugGCUGGc -3'
miRNA:   3'- gugCGCGc-CG--CGGGGCGGGuaCGACC- -5'
29589 5' -64.5 NC_006151.1 + 81389 0.68 0.379898
Target:  5'- cCGCGcCGCGGCGCCCagguugGCCag-GgUGGc -3'
miRNA:   3'- -GUGC-GCGCCGCGGGg-----CGGguaCgACC- -5'
29589 5' -64.5 NC_006151.1 + 9651 0.68 0.379898
Target:  5'- gAgGCGCGGCGCCCCGCgcuuccccuUCccGCUu- -3'
miRNA:   3'- gUgCGCGCCGCGGGGCG---------GGuaCGAcc -5'
29589 5' -64.5 NC_006151.1 + 106511 0.68 0.386968
Target:  5'- gCGCGCGCcgugccgGGCGCgCUgGCcaccuucaCCGUGCUGGc -3'
miRNA:   3'- -GUGCGCG-------CCGCG-GGgCG--------GGUACGACC- -5'
29589 5' -64.5 NC_006151.1 + 69425 0.68 0.387758
Target:  5'- uCGCGCcagGCGGCGCCgCCGCCguUcGCg-- -3'
miRNA:   3'- -GUGCG---CGCCGCGG-GGCGGguA-CGacc -5'
29589 5' -64.5 NC_006151.1 + 103762 0.68 0.387758
Target:  5'- gCGCGcCGCGGCGCUgCGCgagUCGgagcGCUGGc -3'
miRNA:   3'- -GUGC-GCGCCGCGGgGCG---GGUa---CGACC- -5'
29589 5' -64.5 NC_006151.1 + 64294 0.68 0.387758
Target:  5'- -cCGCGUugucgGGCGUgCCGCagcgcgCCGUGCUGGc -3'
miRNA:   3'- guGCGCG-----CCGCGgGGCG------GGUACGACC- -5'
29589 5' -64.5 NC_006151.1 + 9040 0.68 0.387758
Target:  5'- cCGC-CGgGGCGCCCCGC--GUGCUccGGg -3'
miRNA:   3'- -GUGcGCgCCGCGGGGCGggUACGA--CC- -5'
29589 5' -64.5 NC_006151.1 + 52439 0.68 0.387758
Target:  5'- gCACGCGCaGCGCCgCCGCCgugacgGC-GGc -3'
miRNA:   3'- -GUGCGCGcCGCGG-GGCGGgua---CGaCC- -5'
29589 5' -64.5 NC_006151.1 + 64607 0.68 0.395725
Target:  5'- gUACGCcaGCGGCGCCgCGCCgCcgGCc-- -3'
miRNA:   3'- -GUGCG--CGCCGCGGgGCGG-GuaCGacc -5'
29589 5' -64.5 NC_006151.1 + 107608 0.68 0.395725
Target:  5'- -cCGC-CGGCGCCgCCGCCCGccaaGCccgUGGa -3'
miRNA:   3'- guGCGcGCCGCGG-GGCGGGUa---CG---ACC- -5'
29589 5' -64.5 NC_006151.1 + 83091 0.68 0.395725
Target:  5'- cCACGCGUgcaccucgagcgGGCGCCCgCGCCgGUcgcagaGCUcGGg -3'
miRNA:   3'- -GUGCGCG------------CCGCGGG-GCGGgUA------CGA-CC- -5'
29589 5' -64.5 NC_006151.1 + 103308 0.68 0.395725
Target:  5'- -uCGCGCGGCGCgaCGCCgAgcugcgcacGCUGGu -3'
miRNA:   3'- guGCGCGCCGCGggGCGGgUa--------CGACC- -5'
29589 5' -64.5 NC_006151.1 + 84611 0.68 0.395725
Target:  5'- aACGCGCGcCGCCgcgcggCCGCCgCGgcGCUGGa -3'
miRNA:   3'- gUGCGCGCcGCGG------GGCGG-GUa-CGACC- -5'
29589 5' -64.5 NC_006151.1 + 39470 0.68 0.402985
Target:  5'- -gUGCGCuGGCccgggugccgcgaGCUCCGCgcggCCGUGCUGGa -3'
miRNA:   3'- guGCGCG-CCG-------------CGGGGCG----GGUACGACC- -5'
29589 5' -64.5 NC_006151.1 + 75292 0.68 0.403797
Target:  5'- --aGCGUGGCGUCCaCGUCCAggaaGgaGGg -3'
miRNA:   3'- gugCGCGCCGCGGG-GCGGGUa---CgaCC- -5'
29589 5' -64.5 NC_006151.1 + 98465 0.68 0.403797
Target:  5'- gGCGCuGUGGCGCCUgCGCCacgaCUGGg -3'
miRNA:   3'- gUGCG-CGCCGCGGG-GCGGguacGACC- -5'
29589 5' -64.5 NC_006151.1 + 78945 0.68 0.403797
Target:  5'- aCACGCGC-GCGCccgCCCGCCUcgGuCUcGGu -3'
miRNA:   3'- -GUGCGCGcCGCG---GGGCGGGuaC-GA-CC- -5'
29589 5' -64.5 NC_006151.1 + 121909 0.68 0.403797
Target:  5'- gUACGCGCGG-GCCgagggggaCCGC--GUGCUGGg -3'
miRNA:   3'- -GUGCGCGCCgCGG--------GGCGggUACGACC- -5'
29589 5' -64.5 NC_006151.1 + 86081 0.68 0.403797
Target:  5'- cCGCGCGC-GCGCCgCCGCcgCCAUGg-GGc -3'
miRNA:   3'- -GUGCGCGcCGCGG-GGCG--GGUACgaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.