miRNA display CGI


Results 21 - 40 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29589 5' -64.5 NC_006151.1 + 137997 0.66 0.535984
Target:  5'- gCACGCcCGGCGCaCgCCGUCacgcgCGUGCUGc -3'
miRNA:   3'- -GUGCGcGCCGCG-G-GGCGG-----GUACGACc -5'
29589 5' -64.5 NC_006151.1 + 17945 0.66 0.535984
Target:  5'- aGCG-GCGGCGUCUccggCGCCCGccUGCcGGc -3'
miRNA:   3'- gUGCgCGCCGCGGG----GCGGGU--ACGaCC- -5'
29589 5' -64.5 NC_006151.1 + 30905 0.66 0.535984
Target:  5'- aGCGCGCGGUagcGCCCgcgggcgGCCCGcGC-GGa -3'
miRNA:   3'- gUGCGCGCCG---CGGGg------CGGGUaCGaCC- -5'
29589 5' -64.5 NC_006151.1 + 31592 0.66 0.535984
Target:  5'- gGCGCGCuccGCGCUcccccgCCGCCUggGCgGGg -3'
miRNA:   3'- gUGCGCGc--CGCGG------GGCGGGuaCGaCC- -5'
29589 5' -64.5 NC_006151.1 + 32611 0.66 0.535984
Target:  5'- aGCGCGgGGCGCCgCGCCUcucccucccGCUu- -3'
miRNA:   3'- gUGCGCgCCGCGGgGCGGGua-------CGAcc -5'
29589 5' -64.5 NC_006151.1 + 76704 0.66 0.535984
Target:  5'- gGCGCGgGcGCGCCgcggCCGCCUuuuaAUGCaugaUGGa -3'
miRNA:   3'- gUGCGCgC-CGCGG----GGCGGG----UACG----ACC- -5'
29589 5' -64.5 NC_006151.1 + 90701 0.66 0.535984
Target:  5'- gGCG-GCGGaCGCgCCCGCCCc-GCaGGc -3'
miRNA:   3'- gUGCgCGCC-GCG-GGGCGGGuaCGaCC- -5'
29589 5' -64.5 NC_006151.1 + 99335 0.66 0.535984
Target:  5'- gACGCGCaGCGCgCCGUCg--GCUGc -3'
miRNA:   3'- gUGCGCGcCGCGgGGCGGguaCGACc -5'
29589 5' -64.5 NC_006151.1 + 118098 0.66 0.535984
Target:  5'- gAgGCGCuGCGCCgCGaCC-UGCUGGc -3'
miRNA:   3'- gUgCGCGcCGCGGgGCgGGuACGACC- -5'
29589 5' -64.5 NC_006151.1 + 128276 0.66 0.535984
Target:  5'- gCGCGCGCaGCGCCgCGCgCAgGUacgGGu -3'
miRNA:   3'- -GUGCGCGcCGCGGgGCGgGUaCGa--CC- -5'
29589 5' -64.5 NC_006151.1 + 136328 0.66 0.535984
Target:  5'- cCGCGCGUGGa-CCCCaacCCCAgcgGcCUGGa -3'
miRNA:   3'- -GUGCGCGCCgcGGGGc--GGGUa--C-GACC- -5'
29589 5' -64.5 NC_006151.1 + 141750 0.66 0.535984
Target:  5'- gGCGCGgGGCGCg-CGCCCcgG-UGGc -3'
miRNA:   3'- gUGCGCgCCGCGggGCGGGuaCgACC- -5'
29589 5' -64.5 NC_006151.1 + 117593 0.66 0.535984
Target:  5'- -cCGCGUGGCGCCgCCGCaguagaCCGUGg--- -3'
miRNA:   3'- guGCGCGCCGCGG-GGCG------GGUACgacc -5'
29589 5' -64.5 NC_006151.1 + 137614 0.66 0.535984
Target:  5'- gGCGCGggcggggacccCGGCGCCuCCGCCCucguccGCg-- -3'
miRNA:   3'- gUGCGC-----------GCCGCGG-GGCGGGua----CGacc -5'
29589 5' -64.5 NC_006151.1 + 69677 0.66 0.526626
Target:  5'- cCGCGCGUcagcuGCGCCUCGCCgucgAUGgUGGc -3'
miRNA:   3'- -GUGCGCGc----CGCGGGGCGGg---UACgACC- -5'
29589 5' -64.5 NC_006151.1 + 104410 0.66 0.526626
Target:  5'- gGCGUGCuGGCccGCgCCGCCgCcgGCaUGGg -3'
miRNA:   3'- gUGCGCG-CCG--CGgGGCGG-GuaCG-ACC- -5'
29589 5' -64.5 NC_006151.1 + 133757 0.66 0.525694
Target:  5'- gCGCGUGCGGaucgaucuuuauaCGCgCCGCCCc-GCgGGg -3'
miRNA:   3'- -GUGCGCGCC-------------GCGgGGCGGGuaCGaCC- -5'
29589 5' -64.5 NC_006151.1 + 74988 0.66 0.525694
Target:  5'- gAUGCGCGGCaucgcgcGCaCCUGCCCcaucacCUGGg -3'
miRNA:   3'- gUGCGCGCCG-------CG-GGGCGGGuac---GACC- -5'
29589 5' -64.5 NC_006151.1 + 130391 0.66 0.525694
Target:  5'- --aGCGCGaaggccaGCGCCUCGCCCGcgaGCgcgGGc -3'
miRNA:   3'- gugCGCGC-------CGCGGGGCGGGUa--CGa--CC- -5'
29589 5' -64.5 NC_006151.1 + 70647 0.66 0.517331
Target:  5'- cCGCGCGCgaGGCGCCCguccucacgcgCGCCgCcgGCg-- -3'
miRNA:   3'- -GUGCGCG--CCGCGGG-----------GCGG-GuaCGacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.