miRNA display CGI


Results 41 - 60 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29589 5' -64.5 NC_006151.1 + 105041 0.66 0.517331
Target:  5'- gGCGCugcugcuCGGCGCCgucgaggaggCGCCCGaGCUGGa -3'
miRNA:   3'- gUGCGc------GCCGCGGg---------GCGGGUaCGACC- -5'
29589 5' -64.5 NC_006151.1 + 125038 0.66 0.517331
Target:  5'- gACGCcaucuaccgGCGGCGCUacaacagcaCGCaCGUGCUGGc -3'
miRNA:   3'- gUGCG---------CGCCGCGGg--------GCGgGUACGACC- -5'
29589 5' -64.5 NC_006151.1 + 125594 0.66 0.517331
Target:  5'- --aGCGCGGCacguGCUacagCCGCCC--GCUGGu -3'
miRNA:   3'- gugCGCGCCG----CGG----GGCGGGuaCGACC- -5'
29589 5' -64.5 NC_006151.1 + 70647 0.66 0.517331
Target:  5'- cCGCGCGCgaGGCGCCCguccucacgcgCGCCgCcgGCg-- -3'
miRNA:   3'- -GUGCGCG--CCGCGGG-----------GCGG-GuaCGacc -5'
29589 5' -64.5 NC_006151.1 + 81902 0.66 0.517331
Target:  5'- gCGCGCcggucGCGGCGCgCCGCCUcgGa--- -3'
miRNA:   3'- -GUGCG-----CGCCGCGgGGCGGGuaCgacc -5'
29589 5' -64.5 NC_006151.1 + 70498 0.66 0.511785
Target:  5'- cCGCGUgGUGGCGCacaccgacgccaccgCCUGCUCGUGCUa- -3'
miRNA:   3'- -GUGCG-CGCCGCG---------------GGGCGGGUACGAcc -5'
29589 5' -64.5 NC_006151.1 + 84299 0.66 0.511785
Target:  5'- gACGCGCGGCaacgcgagcgcgaugGCCgCGaCCGUGCgcGGc -3'
miRNA:   3'- gUGCGCGCCG---------------CGGgGCgGGUACGa-CC- -5'
29589 5' -64.5 NC_006151.1 + 71231 0.66 0.511785
Target:  5'- gCGCGCGCGcCGaCCCCgucgaguaccugaacGCCCA-GCUcGGg -3'
miRNA:   3'- -GUGCGCGCcGC-GGGG---------------CGGGUaCGA-CC- -5'
29589 5' -64.5 NC_006151.1 + 136213 0.66 0.508101
Target:  5'- gGCGCGCuucGGC-CCCgaggagaagaCGCUgGUGCUGGc -3'
miRNA:   3'- gUGCGCG---CCGcGGG----------GCGGgUACGACC- -5'
29589 5' -64.5 NC_006151.1 + 50026 0.66 0.508101
Target:  5'- -cCGCGCGGCGCCCCcggGCgCG-GCc-- -3'
miRNA:   3'- guGCGCGCCGCGGGG---CGgGUaCGacc -5'
29589 5' -64.5 NC_006151.1 + 2484 0.66 0.508101
Target:  5'- -cCGCGCGGUGCCCgaaggcggCGCCCGcGUc-- -3'
miRNA:   3'- guGCGCGCCGCGGG--------GCGGGUaCGacc -5'
29589 5' -64.5 NC_006151.1 + 23651 0.66 0.507182
Target:  5'- gCGCGUGCgGGUGUacgaguaCCCGCCgGUGCa-- -3'
miRNA:   3'- -GUGCGCG-CCGCG-------GGGCGGgUACGacc -5'
29589 5' -64.5 NC_006151.1 + 105534 0.66 0.505346
Target:  5'- gCGCGCaucgggcccgagcuGCGGCacgacGCCCUGCgCGcGCUGGc -3'
miRNA:   3'- -GUGCG--------------CGCCG-----CGGGGCGgGUaCGACC- -5'
29589 5' -64.5 NC_006151.1 + 132491 0.66 0.498942
Target:  5'- gGCGCGCGuaGCGCUCCucgcgcGCCCGcaGCgUGGa -3'
miRNA:   3'- gUGCGCGC--CGCGGGG------CGGGUa-CG-ACC- -5'
29589 5' -64.5 NC_006151.1 + 92641 0.66 0.498942
Target:  5'- uCAUGCGCGaCGCCggcaaggcgcUCGCCC-UGCUGc -3'
miRNA:   3'- -GUGCGCGCcGCGG----------GGCGGGuACGACc -5'
29589 5' -64.5 NC_006151.1 + 86235 0.66 0.498942
Target:  5'- -cCGCGCuGCGacaUCgGCgCCGUGCUGGc -3'
miRNA:   3'- guGCGCGcCGCg--GGgCG-GGUACGACC- -5'
29589 5' -64.5 NC_006151.1 + 134623 0.66 0.498942
Target:  5'- aGCGCGUGGC-CCa-GCUgGUGCUGa -3'
miRNA:   3'- gUGCGCGCCGcGGggCGGgUACGACc -5'
29589 5' -64.5 NC_006151.1 + 95440 0.66 0.498942
Target:  5'- gGCGaggGCGGCGCCgCGCguguCCGUG-UGGa -3'
miRNA:   3'- gUGCg--CGCCGCGGgGCG----GGUACgACC- -5'
29589 5' -64.5 NC_006151.1 + 76786 0.66 0.498942
Target:  5'- gACGCaGuCGGCGCCguacagCGCCCcgGCgagGGc -3'
miRNA:   3'- gUGCG-C-GCCGCGGg-----GCGGGuaCGa--CC- -5'
29589 5' -64.5 NC_006151.1 + 16886 0.66 0.498942
Target:  5'- gGCGCGCucGCGUccguugccgcgCCCGCCCcgGCgccGGc -3'
miRNA:   3'- gUGCGCGc-CGCG-----------GGGCGGGuaCGa--CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.