miRNA display CGI


Results 61 - 80 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29589 5' -64.5 NC_006151.1 + 38305 0.66 0.498031
Target:  5'- -cCGCGCGGCccgggcccgcggaGCCCgCGCCCGgccUGCccccgcucUGGc -3'
miRNA:   3'- guGCGCGCCG-------------CGGG-GCGGGU---ACG--------ACC- -5'
29589 5' -64.5 NC_006151.1 + 5387 0.66 0.489858
Target:  5'- uGCGgG-GGCGCCCCGCCguccCcgGCgaGGc -3'
miRNA:   3'- gUGCgCgCCGCGGGGCGG----GuaCGa-CC- -5'
29589 5' -64.5 NC_006151.1 + 134314 0.66 0.489858
Target:  5'- gCACGcCGCuGCGCCUCGCgCCggGCa-- -3'
miRNA:   3'- -GUGC-GCGcCGCGGGGCG-GGuaCGacc -5'
29589 5' -64.5 NC_006151.1 + 2012 0.66 0.489858
Target:  5'- -cCGagGgGGCGCCCCGCUCA-GC-GGa -3'
miRNA:   3'- guGCg-CgCCGCGGGGCGGGUaCGaCC- -5'
29589 5' -64.5 NC_006151.1 + 55438 0.66 0.489858
Target:  5'- gGCGCGgacgggacCGGCGCCgCCGgCCccGCcGGg -3'
miRNA:   3'- gUGCGC--------GCCGCGG-GGCgGGuaCGaCC- -5'
29589 5' -64.5 NC_006151.1 + 66873 0.66 0.489858
Target:  5'- gGCGCGaagGGCGCgCCCGgCCCcgcGCcGGa -3'
miRNA:   3'- gUGCGCg--CCGCG-GGGC-GGGua-CGaCC- -5'
29589 5' -64.5 NC_006151.1 + 122685 0.66 0.489858
Target:  5'- uGCGCGCGGCGgCCguggaGCUCGcGCUcuucGGg -3'
miRNA:   3'- gUGCGCGCCGCgGGg----CGGGUaCGA----CC- -5'
29589 5' -64.5 NC_006151.1 + 138984 0.66 0.489858
Target:  5'- gACGCGCcGCGCCgCGCUCAgccGCg-- -3'
miRNA:   3'- gUGCGCGcCGCGGgGCGGGUa--CGacc -5'
29589 5' -64.5 NC_006151.1 + 60895 0.66 0.489858
Target:  5'- cCGCGCGagcagGGCGUCCaCGCgggccagucgcgCCAUGgUGGg -3'
miRNA:   3'- -GUGCGCg----CCGCGGG-GCG------------GGUACgACC- -5'
29589 5' -64.5 NC_006151.1 + 100150 0.67 0.484444
Target:  5'- gCACGCGCccuccGGCGCCgccuggaggacauggCCaCCCAcacgggcgaccUGCUGGa -3'
miRNA:   3'- -GUGCGCG-----CCGCGG---------------GGcGGGU-----------ACGACC- -5'
29589 5' -64.5 NC_006151.1 + 112618 0.67 0.480851
Target:  5'- gCugGCGCuGGacgaGCCCUGCCgCGUGUg-- -3'
miRNA:   3'- -GugCGCG-CCg---CGGGGCGG-GUACGacc -5'
29589 5' -64.5 NC_006151.1 + 21027 0.67 0.480851
Target:  5'- gACGC-CGGCGCCCCugaagaggacGCCCccgacGCgcgGGg -3'
miRNA:   3'- gUGCGcGCCGCGGGG----------CGGGua---CGa--CC- -5'
29589 5' -64.5 NC_006151.1 + 51350 0.67 0.480851
Target:  5'- cCACG-GCcaGGaccgugaGCaCCgGCCCGUGCUGGa -3'
miRNA:   3'- -GUGCgCG--CCg------CG-GGgCGGGUACGACC- -5'
29589 5' -64.5 NC_006151.1 + 104272 0.67 0.480851
Target:  5'- gGCGCgGCGGCgGgCCCGCCgcUGCaGGc -3'
miRNA:   3'- gUGCG-CGCCG-CgGGGCGGguACGaCC- -5'
29589 5' -64.5 NC_006151.1 + 99592 0.67 0.480851
Target:  5'- nGCG-GCGGCcgaGCgCCGCgCCggGCUGGc -3'
miRNA:   3'- gUGCgCGCCG---CGgGGCG-GGuaCGACC- -5'
29589 5' -64.5 NC_006151.1 + 127488 0.67 0.471926
Target:  5'- aGC-CGCGGa-CCCCGCgCCGgaaGCUGGu -3'
miRNA:   3'- gUGcGCGCCgcGGGGCG-GGUa--CGACC- -5'
29589 5' -64.5 NC_006151.1 + 66551 0.67 0.471926
Target:  5'- gCGCGCGCGGcCGCgCCGCcguggaCCcgGCg-- -3'
miRNA:   3'- -GUGCGCGCC-GCGgGGCG------GGuaCGacc -5'
29589 5' -64.5 NC_006151.1 + 55234 0.67 0.471926
Target:  5'- gGCGC-CGGCGCgCaGCCgGUGCaGGa -3'
miRNA:   3'- gUGCGcGCCGCGgGgCGGgUACGaCC- -5'
29589 5' -64.5 NC_006151.1 + 3137 0.67 0.471926
Target:  5'- gGCGCGgGGCGCCCuCGgCgG-GCUcGGc -3'
miRNA:   3'- gUGCGCgCCGCGGG-GCgGgUaCGA-CC- -5'
29589 5' -64.5 NC_006151.1 + 103956 0.67 0.471926
Target:  5'- gGCGCucGCGGCGCgCCaGCgCGUcggcgaGCUGGa -3'
miRNA:   3'- gUGCG--CGCCGCGgGG-CGgGUA------CGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.