miRNA display CGI


Results 81 - 100 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29589 5' -64.5 NC_006151.1 + 138158 0.67 0.470151
Target:  5'- gCGCGCGCucgaggccuucguGGCggacgugGCCauggCGCCCGUGCUGcGg -3'
miRNA:   3'- -GUGCGCG-------------CCG-------CGGg---GCGGGUACGAC-C- -5'
29589 5' -64.5 NC_006151.1 + 97630 0.67 0.469265
Target:  5'- gGCGCGCGGCcaugucguuggugcGCgCCGCCUc--CUGGu -3'
miRNA:   3'- gUGCGCGCCG--------------CGgGGCGGGuacGACC- -5'
29589 5' -64.5 NC_006151.1 + 107551 0.67 0.468379
Target:  5'- -cCGC-CGGCGCCgCCGCCCGccaagcccgcggaGCUGa -3'
miRNA:   3'- guGCGcGCCGCGG-GGCGGGUa------------CGACc -5'
29589 5' -64.5 NC_006151.1 + 102369 0.67 0.463085
Target:  5'- gACGCGUccGCGCCCgUGgCCAaGCUGGc -3'
miRNA:   3'- gUGCGCGc-CGCGGG-GCgGGUaCGACC- -5'
29589 5' -64.5 NC_006151.1 + 36644 0.67 0.463085
Target:  5'- gGCG-GCGGCGCCCCcUCCGccGgaGGg -3'
miRNA:   3'- gUGCgCGCCGCGGGGcGGGUa-CgaCC- -5'
29589 5' -64.5 NC_006151.1 + 47762 0.67 0.463085
Target:  5'- gCGCGaUGCGGCGaUCgCGCCgA-GCUGGa -3'
miRNA:   3'- -GUGC-GCGCCGC-GGgGCGGgUaCGACC- -5'
29589 5' -64.5 NC_006151.1 + 49840 0.67 0.463085
Target:  5'- gACG-GCGGCGgCggGCCCGcGCUGGg -3'
miRNA:   3'- gUGCgCGCCGCgGggCGGGUaCGACC- -5'
29589 5' -64.5 NC_006151.1 + 74540 0.67 0.463085
Target:  5'- aGCGCGUGGUugaGCUCCuCCUGggGCUGGu -3'
miRNA:   3'- gUGCGCGCCG---CGGGGcGGGUa-CGACC- -5'
29589 5' -64.5 NC_006151.1 + 96633 0.67 0.463085
Target:  5'- gGCGCGCaGCGCCUCgaGCUCGgcgGCgagGGc -3'
miRNA:   3'- gUGCGCGcCGCGGGG--CGGGUa--CGa--CC- -5'
29589 5' -64.5 NC_006151.1 + 102407 0.67 0.463085
Target:  5'- gGCGCGCGucgcGCGgCCCGCgaacgaggCCAUGCaccGGg -3'
miRNA:   3'- gUGCGCGC----CGCgGGGCG--------GGUACGa--CC- -5'
29589 5' -64.5 NC_006151.1 + 104722 0.67 0.463085
Target:  5'- -cUGCGCGGCGCCgUGaCCUAc-CUGGa -3'
miRNA:   3'- guGCGCGCCGCGGgGC-GGGUacGACC- -5'
29589 5' -64.5 NC_006151.1 + 137316 0.67 0.463085
Target:  5'- -cCGCGCGGUGCUCgacgCGCUCGcGCUGc -3'
miRNA:   3'- guGCGCGCCGCGGG----GCGGGUaCGACc -5'
29589 5' -64.5 NC_006151.1 + 120798 0.67 0.454332
Target:  5'- gACGCGgaGcGCGCCgCGCgCgagGUGCUGGa -3'
miRNA:   3'- gUGCGCg-C-CGCGGgGCGgG---UACGACC- -5'
29589 5' -64.5 NC_006151.1 + 121425 0.67 0.454332
Target:  5'- gACGuCGCGGgGCUCgCGCCgGccucGCUGGu -3'
miRNA:   3'- gUGC-GCGCCgCGGG-GCGGgUa---CGACC- -5'
29589 5' -64.5 NC_006151.1 + 35196 0.67 0.454332
Target:  5'- gGCGCGCGGgagaCGCCUccgcgCGCCCAUugGCccGGg -3'
miRNA:   3'- gUGCGCGCC----GCGGG-----GCGGGUA--CGa-CC- -5'
29589 5' -64.5 NC_006151.1 + 73405 0.67 0.454332
Target:  5'- cCGCGUacGCGGCcgugaaGCCCaCGCCCAgguccacGUUGGc -3'
miRNA:   3'- -GUGCG--CGCCG------CGGG-GCGGGUa------CGACC- -5'
29589 5' -64.5 NC_006151.1 + 106062 0.67 0.454332
Target:  5'- uCGCGCGCuucguGCGCCaCCGCCgCGccGaCUGGg -3'
miRNA:   3'- -GUGCGCGc----CGCGG-GGCGG-GUa-C-GACC- -5'
29589 5' -64.5 NC_006151.1 + 99273 0.67 0.453461
Target:  5'- uCACGCGCcgccacuGCGaCCUccucgagCGCgCCGUGCUGGa -3'
miRNA:   3'- -GUGCGCGc------CGC-GGG-------GCG-GGUACGACC- -5'
29589 5' -64.5 NC_006151.1 + 102637 0.67 0.451723
Target:  5'- gCGCGCucgagGCGGCGCUcgaggCCGCCCAcGCcaacuuugacgccgUGGa -3'
miRNA:   3'- -GUGCG-----CGCCGCGG-----GGCGGGUaCG--------------ACC- -5'
29589 5' -64.5 NC_006151.1 + 139127 0.67 0.445669
Target:  5'- uCACGCGCGccccguGCGCCCuCGUCUucccGCUGu -3'
miRNA:   3'- -GUGCGCGC------CGCGGG-GCGGGua--CGACc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.