miRNA display CGI


Results 1 - 20 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29589 5' -64.5 NC_006151.1 + 2012 0.66 0.489858
Target:  5'- -cCGagGgGGCGCCCCGCUCA-GC-GGa -3'
miRNA:   3'- guGCg-CgCCGCGGGGCGGGUaCGaCC- -5'
29589 5' -64.5 NC_006151.1 + 2452 0.68 0.428625
Target:  5'- cCGCaGCGgGGCGCCgaGCCCccagcgGUUGGc -3'
miRNA:   3'- -GUG-CGCgCCGCGGggCGGGua----CGACC- -5'
29589 5' -64.5 NC_006151.1 + 2484 0.66 0.508101
Target:  5'- -cCGCGCGGUGCCCgaaggcggCGCCCGcGUc-- -3'
miRNA:   3'- guGCGCGCCGCGGG--------GCGGGUaCGacc -5'
29589 5' -64.5 NC_006151.1 + 3137 0.67 0.471926
Target:  5'- gGCGCGgGGCGCCCuCGgCgG-GCUcGGc -3'
miRNA:   3'- gUGCGCgCCGCGGG-GCgGgUaCGA-CC- -5'
29589 5' -64.5 NC_006151.1 + 3697 0.8 0.069184
Target:  5'- gGCGCGCGGCGCUucuucuugcgCCGCUCGggcGCUGGg -3'
miRNA:   3'- gUGCGCGCCGCGG----------GGCGGGUa--CGACC- -5'
29589 5' -64.5 NC_006151.1 + 4049 0.76 0.120146
Target:  5'- gCGgGCGCGG-GCCCCGUCCAcGCUGu -3'
miRNA:   3'- -GUgCGCGCCgCGGGGCGGGUaCGACc -5'
29589 5' -64.5 NC_006151.1 + 5387 0.66 0.489858
Target:  5'- uGCGgG-GGCGCCCCGCCguccCcgGCgaGGc -3'
miRNA:   3'- gUGCgCgCCGCGGGGCGG----GuaCGa-CC- -5'
29589 5' -64.5 NC_006151.1 + 5692 0.68 0.411972
Target:  5'- -cCGUGcCGGCGCUgCGgCCAccgcUGCUGGc -3'
miRNA:   3'- guGCGC-GCCGCGGgGCgGGU----ACGACC- -5'
29589 5' -64.5 NC_006151.1 + 7665 0.67 0.445669
Target:  5'- gCGCGCGCuccgagGGCGCCCCaGCCgGUcGgaGa -3'
miRNA:   3'- -GUGCGCG------CCGCGGGG-CGGgUA-CgaCc -5'
29589 5' -64.5 NC_006151.1 + 8126 0.69 0.33502
Target:  5'- --aGCGCGGa-CCCCGCCCgGUGggGGg -3'
miRNA:   3'- gugCGCGCCgcGGGGCGGG-UACgaCC- -5'
29589 5' -64.5 NC_006151.1 + 8297 0.68 0.403797
Target:  5'- gCGCGgGCGccGCGUCCCGCCCcgaGCccccgGGg -3'
miRNA:   3'- -GUGCgCGC--CGCGGGGCGGGua-CGa----CC- -5'
29589 5' -64.5 NC_006151.1 + 8366 0.7 0.314078
Target:  5'- gGCGCGaGGC-CCCCGCCCccGggGGg -3'
miRNA:   3'- gUGCGCgCCGcGGGGCGGGuaCgaCC- -5'
29589 5' -64.5 NC_006151.1 + 8963 0.67 0.4371
Target:  5'- cCACGCGCGcGCGCCCCGggaaggGUcGGg -3'
miRNA:   3'- -GUGCGCGC-CGCGGGGCgggua-CGaCC- -5'
29589 5' -64.5 NC_006151.1 + 9040 0.68 0.387758
Target:  5'- cCGC-CGgGGCGCCCCGC--GUGCUccGGg -3'
miRNA:   3'- -GUGcGCgCCGCGGGGCGggUACGA--CC- -5'
29589 5' -64.5 NC_006151.1 + 9651 0.68 0.379898
Target:  5'- gAgGCGCGGCGCCCCGCgcuuccccuUCccGCUu- -3'
miRNA:   3'- gUgCGCGCCGCGGGGCG---------GGuaCGAcc -5'
29589 5' -64.5 NC_006151.1 + 10645 0.75 0.142661
Target:  5'- --gGCGCGGCauCCCCGCCCAggcgGCgGGg -3'
miRNA:   3'- gugCGCGCCGc-GGGGCGGGUa---CGaCC- -5'
29589 5' -64.5 NC_006151.1 + 11163 0.66 0.545399
Target:  5'- cCugGCGCGGCGCCuagacaCCGUUUcUGCa-- -3'
miRNA:   3'- -GugCGCGCCGCGG------GGCGGGuACGacc -5'
29589 5' -64.5 NC_006151.1 + 15050 0.72 0.234833
Target:  5'- gGCGCGCGGgGCCCCggcGCCUucUGCgcGGc -3'
miRNA:   3'- gUGCGCGCCgCGGGG---CGGGu-ACGa-CC- -5'
29589 5' -64.5 NC_006151.1 + 15171 0.68 0.418585
Target:  5'- aCACGCGCGcccuGCGCCgCGCCCucuuUGacuuuuacgccaUGGg -3'
miRNA:   3'- -GUGCGCGC----CGCGGgGCGGGu---ACg-----------ACC- -5'
29589 5' -64.5 NC_006151.1 + 15219 0.78 0.093671
Target:  5'- aCACGCGCcaGCGCCCCucgGCCCccUGCUGGc -3'
miRNA:   3'- -GUGCGCGc-CGCGGGG---CGGGu-ACGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.