miRNA display CGI


Results 21 - 40 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29589 5' -64.5 NC_006151.1 + 16886 0.66 0.498942
Target:  5'- gGCGCGCucGCGUccguugccgcgCCCGCCCcgGCgccGGc -3'
miRNA:   3'- gUGCGCGc-CGCG-----------GGGCGGGuaCGa--CC- -5'
29589 5' -64.5 NC_006151.1 + 17945 0.66 0.535984
Target:  5'- aGCG-GCGGCGUCUccggCGCCCGccUGCcGGc -3'
miRNA:   3'- gUGCgCGCCGCGGG----GCGGGU--ACGaCC- -5'
29589 5' -64.5 NC_006151.1 + 18697 0.66 0.545399
Target:  5'- gCGCGgGCGGCGCCggcgucgugacgCCGUCCAcGUa-- -3'
miRNA:   3'- -GUGCgCGCCGCGG------------GGCGGGUaCGacc -5'
29589 5' -64.5 NC_006151.1 + 18994 0.68 0.420249
Target:  5'- gUACGCGCGGCGCgCCaccaGCCgCGcGCg-- -3'
miRNA:   3'- -GUGCGCGCCGCG-GGg---CGG-GUaCGacc -5'
29589 5' -64.5 NC_006151.1 + 19278 0.68 0.403797
Target:  5'- gGCGCGCGGgGCCCaccggGgCCAgcgGCgcgGGc -3'
miRNA:   3'- gUGCGCGCCgCGGGg----CgGGUa--CGa--CC- -5'
29589 5' -64.5 NC_006151.1 + 20223 0.7 0.300676
Target:  5'- -cCGCGCaGGCGaCCCCGCCCAagaagaucaGgaGGa -3'
miRNA:   3'- guGCGCG-CCGC-GGGGCGGGUa--------CgaCC- -5'
29589 5' -64.5 NC_006151.1 + 21027 0.67 0.480851
Target:  5'- gACGC-CGGCGCCCCugaagaggacGCCCccgacGCgcgGGg -3'
miRNA:   3'- gUGCGcGCCGCGGGG----------CGGGua---CGa--CC- -5'
29589 5' -64.5 NC_006151.1 + 21976 0.69 0.372144
Target:  5'- --gGUGCGGCGCCggcagCGCCCAaagaucUGcCUGGg -3'
miRNA:   3'- gugCGCGCCGCGGg----GCGGGU------AC-GACC- -5'
29589 5' -64.5 NC_006151.1 + 22764 0.67 0.445669
Target:  5'- gAUGUgGCGGCucuucugcuggGCCUCGCgCaCGUGCUGGg -3'
miRNA:   3'- gUGCG-CGCCG-----------CGGGGCG-G-GUACGACC- -5'
29589 5' -64.5 NC_006151.1 + 23651 0.66 0.507182
Target:  5'- gCGCGUGCgGGUGUacgaguaCCCGCCgGUGCa-- -3'
miRNA:   3'- -GUGCGCG-CCGCG-------GGGCGGgUACGacc -5'
29589 5' -64.5 NC_006151.1 + 26327 0.66 0.545399
Target:  5'- aGCGCGgGGCGaggCCCGCCuCAcgggGCggcGGc -3'
miRNA:   3'- gUGCGCgCCGCg--GGGCGG-GUa---CGa--CC- -5'
29589 5' -64.5 NC_006151.1 + 26388 0.66 0.517331
Target:  5'- gGCGgGCGGCGUccuuCCCGCCCuccucGCc-- -3'
miRNA:   3'- gUGCgCGCCGCG----GGGCGGGua---CGacc -5'
29589 5' -64.5 NC_006151.1 + 26985 0.72 0.224248
Target:  5'- gCGCaGCGgGGCGCUCUGCUCGggcgagaGCUGGa -3'
miRNA:   3'- -GUG-CGCgCCGCGGGGCGGGUa------CGACC- -5'
29589 5' -64.5 NC_006151.1 + 30905 0.66 0.535984
Target:  5'- aGCGCGCGGUagcGCCCgcgggcgGCCCGcGC-GGa -3'
miRNA:   3'- gUGCGCGCCG---CGGGg------CGGGUaCGaCC- -5'
29589 5' -64.5 NC_006151.1 + 31592 0.66 0.535984
Target:  5'- gGCGCGCuccGCGCUcccccgCCGCCUggGCgGGg -3'
miRNA:   3'- gUGCGCGc--CGCGG------GGCGGGuaCGaCC- -5'
29589 5' -64.5 NC_006151.1 + 32611 0.66 0.535984
Target:  5'- aGCGCGgGGCGCCgCGCCUcucccucccGCUu- -3'
miRNA:   3'- gUGCGCgCCGCGGgGCGGGua-------CGAcc -5'
29589 5' -64.5 NC_006151.1 + 32880 0.71 0.257259
Target:  5'- cCGCGCGgGGgGCCCCcuccugucGCCUGUcGUUGGa -3'
miRNA:   3'- -GUGCGCgCCgCGGGG--------CGGGUA-CGACC- -5'
29589 5' -64.5 NC_006151.1 + 33220 0.75 0.146177
Target:  5'- gCACGCGgGGCGCCCCGgCgGgcgGgaGGg -3'
miRNA:   3'- -GUGCGCgCCGCGGGGCgGgUa--CgaCC- -5'
29589 5' -64.5 NC_006151.1 + 35196 0.67 0.454332
Target:  5'- gGCGCGCGGgagaCGCCUccgcgCGCCCAUugGCccGGg -3'
miRNA:   3'- gUGCGCGCC----GCGGG-----GCGGGUA--CGa-CC- -5'
29589 5' -64.5 NC_006151.1 + 35866 0.69 0.3645
Target:  5'- cCGCGCuCGGCGCCCgGCCUc-GCUcaGGc -3'
miRNA:   3'- -GUGCGcGCCGCGGGgCGGGuaCGA--CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.