miRNA display CGI


Results 41 - 60 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29589 5' -64.5 NC_006151.1 + 36644 0.67 0.463085
Target:  5'- gGCG-GCGGCGCCCCcUCCGccGgaGGg -3'
miRNA:   3'- gUGCgCGCCGCGGGGcGGGUa-CgaCC- -5'
29589 5' -64.5 NC_006151.1 + 37130 0.68 0.428625
Target:  5'- --gGCcCGGCGCCCCacucGCCCGcGCcGGg -3'
miRNA:   3'- gugCGcGCCGCGGGG----CGGGUaCGaCC- -5'
29589 5' -64.5 NC_006151.1 + 37223 0.66 0.545399
Target:  5'- cCGC-CGCGGCcuCCCCGgCCCcgGCcccGGa -3'
miRNA:   3'- -GUGcGCGCCGc-GGGGC-GGGuaCGa--CC- -5'
29589 5' -64.5 NC_006151.1 + 38305 0.66 0.498031
Target:  5'- -cCGCGCGGCccgggcccgcggaGCCCgCGCCCGgccUGCccccgcucUGGc -3'
miRNA:   3'- guGCGCGCCG-------------CGGG-GCGGGU---ACG--------ACC- -5'
29589 5' -64.5 NC_006151.1 + 39002 0.76 0.126218
Target:  5'- gCGCGcCGCGGCGCCCCGCuCCGccGCcgcgccgccUGGa -3'
miRNA:   3'- -GUGC-GCGCCGCGGGGCG-GGUa-CG---------ACC- -5'
29589 5' -64.5 NC_006151.1 + 39112 0.73 0.199082
Target:  5'- -cUGCGCcgagcccgccgagGGCGCCCCGCgCCcgGcCUGGg -3'
miRNA:   3'- guGCGCG-------------CCGCGGGGCG-GGuaC-GACC- -5'
29589 5' -64.5 NC_006151.1 + 39348 0.74 0.173071
Target:  5'- gCGCgGCGCGGCG-CCgGCUCAucgUGCUGGa -3'
miRNA:   3'- -GUG-CGCGCCGCgGGgCGGGU---ACGACC- -5'
29589 5' -64.5 NC_006151.1 + 39393 0.66 0.545399
Target:  5'- gGCcCGCGGaCGgCCCGgCCGUGggGGa -3'
miRNA:   3'- gUGcGCGCC-GCgGGGCgGGUACgaCC- -5'
29589 5' -64.5 NC_006151.1 + 39470 0.68 0.402985
Target:  5'- -gUGCGCuGGCccgggugccgcgaGCUCCGCgcggCCGUGCUGGa -3'
miRNA:   3'- guGCGCG-CCG-------------CGGGGCG----GGUACGACC- -5'
29589 5' -64.5 NC_006151.1 + 39934 0.73 0.194904
Target:  5'- gACGCcgaGGcCGCCCCGCUgGUGCUGa -3'
miRNA:   3'- gUGCGcg-CC-GCGGGGCGGgUACGACc -5'
29589 5' -64.5 NC_006151.1 + 39980 0.76 0.132574
Target:  5'- -cCGCG-GGCGCCCCGCcggCCGUGCUcuGGg -3'
miRNA:   3'- guGCGCgCCGCGGGGCG---GGUACGA--CC- -5'
29589 5' -64.5 NC_006151.1 + 40251 0.71 0.28772
Target:  5'- --aGCGgGGCGCCCCcucgGCCCG-GCcGGa -3'
miRNA:   3'- gugCGCgCCGCGGGG----CGGGUaCGaCC- -5'
29589 5' -64.5 NC_006151.1 + 47762 0.67 0.463085
Target:  5'- gCGCGaUGCGGCGaUCgCGCCgA-GCUGGa -3'
miRNA:   3'- -GUGC-GCGCCGC-GGgGCGGgUaCGACC- -5'
29589 5' -64.5 NC_006151.1 + 49217 0.76 0.132249
Target:  5'- gGCGCGgGGUccccggcucccacGCCCCGCUCG-GCUGGg -3'
miRNA:   3'- gUGCGCgCCG-------------CGGGGCGGGUaCGACC- -5'
29589 5' -64.5 NC_006151.1 + 49266 0.66 0.545399
Target:  5'- gCGCGCcgucguccaGCGGCucuGCgagaCCCGCCCcaaGCUGGu -3'
miRNA:   3'- -GUGCG---------CGCCG---CG----GGGCGGGua-CGACC- -5'
29589 5' -64.5 NC_006151.1 + 49581 0.73 0.190353
Target:  5'- cCGCGCucgcCGGCGCCCCGgCCAgcgcGCUGc -3'
miRNA:   3'- -GUGCGc---GCCGCGGGGCgGGUa---CGACc -5'
29589 5' -64.5 NC_006151.1 + 49840 0.67 0.463085
Target:  5'- gACG-GCGGCGgCggGCCCGcGCUGGg -3'
miRNA:   3'- gUGCgCGCCGCgGggCGGGUaCGACC- -5'
29589 5' -64.5 NC_006151.1 + 50026 0.66 0.508101
Target:  5'- -cCGCGCGGCGCCCCcggGCgCG-GCc-- -3'
miRNA:   3'- guGCGCGCCGCGGGG---CGgGUaCGacc -5'
29589 5' -64.5 NC_006151.1 + 50175 0.66 0.545399
Target:  5'- --aGCGCGGCcgGCCgCGCCgGUGUUc- -3'
miRNA:   3'- gugCGCGCCG--CGGgGCGGgUACGAcc -5'
29589 5' -64.5 NC_006151.1 + 51350 0.67 0.480851
Target:  5'- cCACG-GCcaGGaccgugaGCaCCgGCCCGUGCUGGa -3'
miRNA:   3'- -GUGCgCG--CCg------CG-GGgCGGGUACGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.