miRNA display CGI


Results 61 - 80 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29589 5' -64.5 NC_006151.1 + 52439 0.68 0.387758
Target:  5'- gCACGCGCaGCGCCgCCGCCgugacgGC-GGc -3'
miRNA:   3'- -GUGCGCGcCGCGG-GGCGGgua---CGaCC- -5'
29589 5' -64.5 NC_006151.1 + 52575 0.67 0.445669
Target:  5'- gUACGUGUacucGGCGCUgCCGCCC-UGCgcgUGGa -3'
miRNA:   3'- -GUGCGCG----CCGCGG-GGCGGGuACG---ACC- -5'
29589 5' -64.5 NC_006151.1 + 54399 0.69 0.33502
Target:  5'- gCGCGCGCGGC-CUCgGCgCCGaggcGCUGGc -3'
miRNA:   3'- -GUGCGCGCCGcGGGgCG-GGUa---CGACC- -5'
29589 5' -64.5 NC_006151.1 + 55234 0.67 0.471926
Target:  5'- gGCGC-CGGCGCgCaGCCgGUGCaGGa -3'
miRNA:   3'- gUGCGcGCCGCGgGgCGGgUACGaCC- -5'
29589 5' -64.5 NC_006151.1 + 55438 0.66 0.489858
Target:  5'- gGCGCGgacgggacCGGCGCCgCCGgCCccGCcGGg -3'
miRNA:   3'- gUGCGC--------GCCGCGG-GGCgGGuaCGaCC- -5'
29589 5' -64.5 NC_006151.1 + 56312 0.7 0.294142
Target:  5'- -cCGCGCGGUGCCUgaGCCUGggccggugGCUGGn -3'
miRNA:   3'- guGCGCGCCGCGGGg-CGGGUa-------CGACC- -5'
29589 5' -64.5 NC_006151.1 + 56345 0.79 0.072788
Target:  5'- aGCGCGCGcGCGCCCCGCCgGcGC-GGa -3'
miRNA:   3'- gUGCGCGC-CGCGGGGCGGgUaCGaCC- -5'
29589 5' -64.5 NC_006151.1 + 56454 0.71 0.28772
Target:  5'- gACGCGCGuGCuGCCCCacuaccccaucGCCCAgcgccUGCUGu -3'
miRNA:   3'- gUGCGCGC-CG-CGGGG-----------CGGGU-----ACGACc -5'
29589 5' -64.5 NC_006151.1 + 56566 0.72 0.234833
Target:  5'- -cCGgGCGacGCGCCgCCGCCCGacggGCUGGu -3'
miRNA:   3'- guGCgCGC--CGCGG-GGCGGGUa---CGACC- -5'
29589 5' -64.5 NC_006151.1 + 57113 0.7 0.307321
Target:  5'- aGCGCGCGcCGCCgCGCCCG-GC-GGu -3'
miRNA:   3'- gUGCGCGCcGCGGgGCGGGUaCGaCC- -5'
29589 5' -64.5 NC_006151.1 + 58392 0.72 0.240281
Target:  5'- --aGCGCGGCGCagCCGgCCAUggcgcgcaGCUGGg -3'
miRNA:   3'- gugCGCGCCGCGg-GGCgGGUA--------CGACC- -5'
29589 5' -64.5 NC_006151.1 + 58424 0.68 0.403797
Target:  5'- gGCGUGCGGCaGCCaCGCCUcgG-UGGc -3'
miRNA:   3'- gUGCGCGCCG-CGGgGCGGGuaCgACC- -5'
29589 5' -64.5 NC_006151.1 + 58455 0.66 0.545399
Target:  5'- gCGCGCGCGGCGUCgCgGUCCAc----- -3'
miRNA:   3'- -GUGCGCGCCGCGG-GgCGGGUacgacc -5'
29589 5' -64.5 NC_006151.1 + 58659 0.68 0.376783
Target:  5'- aGgGCGCGGCGCagggccgccaugaCCGCgCCGUGCg-- -3'
miRNA:   3'- gUgCGCGCCGCGg------------GGCG-GGUACGacc -5'
29589 5' -64.5 NC_006151.1 + 59294 0.68 0.403797
Target:  5'- gCGCgGCGUGGCGCCCgCGgCUCA-GCgGGc -3'
miRNA:   3'- -GUG-CGCGCCGCGGG-GC-GGGUaCGaCC- -5'
29589 5' -64.5 NC_006151.1 + 59520 0.66 0.545399
Target:  5'- gCGCGCGCaGCGCCgCgugaggGCCCAgcgcGCgGGc -3'
miRNA:   3'- -GUGCGCGcCGCGGgG------CGGGUa---CGaCC- -5'
29589 5' -64.5 NC_006151.1 + 60895 0.66 0.489858
Target:  5'- cCGCGCGagcagGGCGUCCaCGCgggccagucgcgCCAUGgUGGg -3'
miRNA:   3'- -GUGCGCg----CCGCGGG-GCG------------GGUACgACC- -5'
29589 5' -64.5 NC_006151.1 + 61436 0.69 0.340051
Target:  5'- cCGC-CGCGGCG-CCCGCCCgcguccgccgccauGUGCgGGc -3'
miRNA:   3'- -GUGcGCGCCGCgGGGCGGG--------------UACGaCC- -5'
29589 5' -64.5 NC_006151.1 + 61667 0.69 0.342224
Target:  5'- cCGCuCGUGGC-CCCCGCCCuguuuCUGGa -3'
miRNA:   3'- -GUGcGCGCCGcGGGGCGGGuac--GACC- -5'
29589 5' -64.5 NC_006151.1 + 64294 0.68 0.387758
Target:  5'- -cCGCGUugucgGGCGUgCCGCagcgcgCCGUGCUGGc -3'
miRNA:   3'- guGCGCG-----CCGCGgGGCG------GGUACGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.