miRNA display CGI


Results 81 - 100 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29589 5' -64.5 NC_006151.1 + 64607 0.68 0.395725
Target:  5'- gUACGCcaGCGGCGCCgCGCCgCcgGCc-- -3'
miRNA:   3'- -GUGCG--CGCCGCGGgGCGG-GuaCGacc -5'
29589 5' -64.5 NC_006151.1 + 64637 0.76 0.120146
Target:  5'- gGgGCGCGGCGCCCCGCgCAggaaccGCaGGa -3'
miRNA:   3'- gUgCGCGCCGCGGGGCGgGUa-----CGaCC- -5'
29589 5' -64.5 NC_006151.1 + 65724 0.66 0.545399
Target:  5'- -uCGCGCGGCugcGCgCgGCCCAggaGCcGGg -3'
miRNA:   3'- guGCGCGCCG---CGgGgCGGGUa--CGaCC- -5'
29589 5' -64.5 NC_006151.1 + 66551 0.67 0.471926
Target:  5'- gCGCGCGCGGcCGCgCCGCcguggaCCcgGCg-- -3'
miRNA:   3'- -GUGCGCGCC-GCGgGGCG------GGuaCGacc -5'
29589 5' -64.5 NC_006151.1 + 66873 0.66 0.489858
Target:  5'- gGCGCGaagGGCGCgCCCGgCCCcgcGCcGGa -3'
miRNA:   3'- gUGCGCg--CCGCG-GGGC-GGGua-CGaCC- -5'
29589 5' -64.5 NC_006151.1 + 67040 0.73 0.204293
Target:  5'- cCACGCcgaGC-GCGCCaCCGCCUAccUGCUGGc -3'
miRNA:   3'- -GUGCG---CGcCGCGG-GGCGGGU--ACGACC- -5'
29589 5' -64.5 NC_006151.1 + 67744 0.71 0.281408
Target:  5'- gCACgGCGCGGCgGCCCCGUCgggGUGC-GGc -3'
miRNA:   3'- -GUG-CGCGCCG-CGGGGCGGg--UACGaCC- -5'
29589 5' -64.5 NC_006151.1 + 67976 0.67 0.4371
Target:  5'- cCACGCagucGCGGCGgCCCGCCgGcGCcgcGGc -3'
miRNA:   3'- -GUGCG----CGCCGCgGGGCGGgUaCGa--CC- -5'
29589 5' -64.5 NC_006151.1 + 69425 0.68 0.387758
Target:  5'- uCGCGCcagGCGGCGCCgCCGCCguUcGCg-- -3'
miRNA:   3'- -GUGCG---CGCCGCGG-GGCGGguA-CGacc -5'
29589 5' -64.5 NC_006151.1 + 69529 0.67 0.436248
Target:  5'- cCGCGCGagGGCGCCCUGCaucagcccgcucgCCAcgugGCUGc -3'
miRNA:   3'- -GUGCGCg-CCGCGGGGCG-------------GGUa---CGACc -5'
29589 5' -64.5 NC_006151.1 + 69629 0.71 0.275207
Target:  5'- -uCGCGguCGGCGUCCCGCgCGUGC-GGc -3'
miRNA:   3'- guGCGC--GCCGCGGGGCGgGUACGaCC- -5'
29589 5' -64.5 NC_006151.1 + 69677 0.66 0.526626
Target:  5'- cCGCGCGUcagcuGCGCCUCGCCgucgAUGgUGGc -3'
miRNA:   3'- -GUGCGCGc----CGCGGGGCGGg---UACgACC- -5'
29589 5' -64.5 NC_006151.1 + 70498 0.66 0.511785
Target:  5'- cCGCGUgGUGGCGCacaccgacgccaccgCCUGCUCGUGCUa- -3'
miRNA:   3'- -GUGCG-CGCCGCG---------------GGGCGGGUACGAcc -5'
29589 5' -64.5 NC_006151.1 + 70647 0.66 0.517331
Target:  5'- cCGCGCGCgaGGCGCCCguccucacgcgCGCCgCcgGCg-- -3'
miRNA:   3'- -GUGCGCG--CCGCGGG-----------GCGG-GuaCGacc -5'
29589 5' -64.5 NC_006151.1 + 70895 0.68 0.427783
Target:  5'- uCGCGCGCuGCGUCgugcgCUGCCUggcgcgcGUGCUGGc -3'
miRNA:   3'- -GUGCGCGcCGCGG-----GGCGGG-------UACGACC- -5'
29589 5' -64.5 NC_006151.1 + 71231 0.66 0.511785
Target:  5'- gCGCGCGCGcCGaCCCCgucgaguaccugaacGCCCA-GCUcGGg -3'
miRNA:   3'- -GUGCGCGCcGC-GGGG---------------CGGGUaCGA-CC- -5'
29589 5' -64.5 NC_006151.1 + 71816 0.77 0.098481
Target:  5'- uCGCGCGUGGCGCU--GCCCA-GCUGGa -3'
miRNA:   3'- -GUGCGCGCCGCGGggCGGGUaCGACC- -5'
29589 5' -64.5 NC_006151.1 + 72033 0.72 0.240281
Target:  5'- cCGCGCG-GGCGCCCCGCCgc-GCa-- -3'
miRNA:   3'- -GUGCGCgCCGCGGGGCGGguaCGacc -5'
29589 5' -64.5 NC_006151.1 + 73405 0.67 0.454332
Target:  5'- cCGCGUacGCGGCcgugaaGCCCaCGCCCAgguccacGUUGGc -3'
miRNA:   3'- -GUGCG--CGCCG------CGGG-GCGGGUa------CGACC- -5'
29589 5' -64.5 NC_006151.1 + 73694 0.75 0.157203
Target:  5'- --gGCGCGGCuCUgCGCCgCGUGCUGGg -3'
miRNA:   3'- gugCGCGCCGcGGgGCGG-GUACGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.