miRNA display CGI


Results 101 - 120 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29589 5' -64.5 NC_006151.1 + 74540 0.67 0.463085
Target:  5'- aGCGCGUGGUugaGCUCCuCCUGggGCUGGu -3'
miRNA:   3'- gUGCGCGCCG---CGGGGcGGGUa-CGACC- -5'
29589 5' -64.5 NC_006151.1 + 74988 0.66 0.525694
Target:  5'- gAUGCGCGGCaucgcgcGCaCCUGCCCcaucacCUGGg -3'
miRNA:   3'- gUGCGCGCCG-------CG-GGGCGGGuac---GACC- -5'
29589 5' -64.5 NC_006151.1 + 75292 0.68 0.403797
Target:  5'- --aGCGUGGCGUCCaCGUCCAggaaGgaGGg -3'
miRNA:   3'- gugCGCGCCGCGGG-GCGGGUa---CgaCC- -5'
29589 5' -64.5 NC_006151.1 + 76704 0.66 0.535984
Target:  5'- gGCGCGgGcGCGCCgcggCCGCCUuuuaAUGCaugaUGGa -3'
miRNA:   3'- gUGCGCgC-CGCGG----GGCGGG----UACG----ACC- -5'
29589 5' -64.5 NC_006151.1 + 76786 0.66 0.498942
Target:  5'- gACGCaGuCGGCGCCguacagCGCCCcgGCgagGGc -3'
miRNA:   3'- gUGCG-C-GCCGCGGg-----GCGGGuaCGa--CC- -5'
29589 5' -64.5 NC_006151.1 + 77944 0.71 0.287084
Target:  5'- gGCGCGCGGC-CCCCacgcugagcgugcGCCCGcGCcGGu -3'
miRNA:   3'- gUGCGCGCCGcGGGG-------------CGGGUaCGaCC- -5'
29589 5' -64.5 NC_006151.1 + 78065 0.68 0.411972
Target:  5'- gACGCGCGGCGggagCCUGUCCcUGCa-- -3'
miRNA:   3'- gUGCGCGCCGCg---GGGCGGGuACGacc -5'
29589 5' -64.5 NC_006151.1 + 78945 0.68 0.403797
Target:  5'- aCACGCGC-GCGCccgCCCGCCUcgGuCUcGGu -3'
miRNA:   3'- -GUGCGCGcCGCG---GGGCGGGuaC-GA-CC- -5'
29589 5' -64.5 NC_006151.1 + 79092 0.73 0.185895
Target:  5'- gCGCGCGCGagcgaGCGCCCC-UCCGUcgugGCUGGg -3'
miRNA:   3'- -GUGCGCGC-----CGCGGGGcGGGUA----CGACC- -5'
29589 5' -64.5 NC_006151.1 + 81226 0.68 0.428625
Target:  5'- gGCGCGUgaacacgaagcuGGCGcCCCCGCgCAgggGCaGGg -3'
miRNA:   3'- gUGCGCG------------CCGC-GGGGCGgGUa--CGaCC- -5'
29589 5' -64.5 NC_006151.1 + 81389 0.68 0.379898
Target:  5'- cCGCGcCGCGGCGCCCagguugGCCag-GgUGGc -3'
miRNA:   3'- -GUGC-GCGCCGCGGGg-----CGGguaCgACC- -5'
29589 5' -64.5 NC_006151.1 + 81902 0.66 0.517331
Target:  5'- gCGCGCcggucGCGGCGCgCCGCCUcgGa--- -3'
miRNA:   3'- -GUGCG-----CGCCGCGgGGCGGGuaCgacc -5'
29589 5' -64.5 NC_006151.1 + 82249 0.68 0.428625
Target:  5'- gACGCGCaGGCcgaggaagGCCUCGCCCA-GCg-- -3'
miRNA:   3'- gUGCGCG-CCG--------CGGGGCGGGUaCGacc -5'
29589 5' -64.5 NC_006151.1 + 82530 0.73 0.208644
Target:  5'- uGCGCGUGucguugaGCGCCCCcaGCCCGccgaGCUGGa -3'
miRNA:   3'- gUGCGCGC-------CGCGGGG--CGGGUa---CGACC- -5'
29589 5' -64.5 NC_006151.1 + 83091 0.68 0.395725
Target:  5'- cCACGCGUgcaccucgagcgGGCGCCCgCGCCgGUcgcagaGCUcGGg -3'
miRNA:   3'- -GUGCGCG------------CCGCGGG-GCGGgUA------CGA-CC- -5'
29589 5' -64.5 NC_006151.1 + 83260 0.69 0.33502
Target:  5'- uCGCGCcaGCGGCGCCCCgaGCUCAgguagcgcgacgUGUUGa -3'
miRNA:   3'- -GUGCG--CGCCGCGGGG--CGGGU------------ACGACc -5'
29589 5' -64.5 NC_006151.1 + 84299 0.66 0.511785
Target:  5'- gACGCGCGGCaacgcgagcgcgaugGCCgCGaCCGUGCgcGGc -3'
miRNA:   3'- gUGCGCGCCG---------------CGGgGCgGGUACGa-CC- -5'
29589 5' -64.5 NC_006151.1 + 84431 0.76 0.132574
Target:  5'- gCGCGCgGCGGCGCgCgGCCCAUGUccccccgcgccaUGGa -3'
miRNA:   3'- -GUGCG-CGCCGCGgGgCGGGUACG------------ACC- -5'
29589 5' -64.5 NC_006151.1 + 84512 0.69 0.356964
Target:  5'- aGCGCGCGccacuucaucGCGCCCCcguucCCCGUGggcuuCUGGg -3'
miRNA:   3'- gUGCGCGC----------CGCGGGGc----GGGUAC-----GACC- -5'
29589 5' -64.5 NC_006151.1 + 84611 0.68 0.395725
Target:  5'- aACGCGCGcCGCCgcgcggCCGCCgCGgcGCUGGa -3'
miRNA:   3'- gUGCGCGCcGCGG------GGCGG-GUa-CGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.