miRNA display CGI


Results 1 - 20 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29589 5' -64.5 NC_006151.1 + 142944 0.72 0.245834
Target:  5'- aCACGCGCGccCGCCCuCGCCCAUcGCc-- -3'
miRNA:   3'- -GUGCGCGCc-GCGGG-GCGGGUA-CGacc -5'
29589 5' -64.5 NC_006151.1 + 142261 0.68 0.379898
Target:  5'- uCGCG-GCGaggaGCGCCCCGUCCcgGC-GGc -3'
miRNA:   3'- -GUGCgCGC----CGCGGGGCGGGuaCGaCC- -5'
29589 5' -64.5 NC_006151.1 + 141750 0.66 0.535984
Target:  5'- gGCGCGgGGCGCg-CGCCCcgG-UGGc -3'
miRNA:   3'- gUGCGCgCCGCGggGCGGGuaCgACC- -5'
29589 5' -64.5 NC_006151.1 + 141649 0.67 0.444808
Target:  5'- gGCGCgGCGGgGCCCCGCgggcucgUUGUGgaGGc -3'
miRNA:   3'- gUGCG-CGCCgCGGGGCG-------GGUACgaCC- -5'
29589 5' -64.5 NC_006151.1 + 140439 0.68 0.420249
Target:  5'- gUACGUGCccGGCG-CCUGCCUcgGCgGGa -3'
miRNA:   3'- -GUGCGCG--CCGCgGGGCGGGuaCGaCC- -5'
29589 5' -64.5 NC_006151.1 + 139592 0.76 0.123147
Target:  5'- uCGCGCccccccgaGCGGCGgCCCGUCCGggcgcgGCUGGg -3'
miRNA:   3'- -GUGCG--------CGCCGCgGGGCGGGUa-----CGACC- -5'
29589 5' -64.5 NC_006151.1 + 139556 0.7 0.327927
Target:  5'- aGCGaggaGCGGCGCCCgGUCCGcgagcGcCUGGg -3'
miRNA:   3'- gUGCg---CGCCGCGGGgCGGGUa----C-GACC- -5'
29589 5' -64.5 NC_006151.1 + 139127 0.67 0.445669
Target:  5'- uCACGCGCGccccguGCGCCCuCGUCUucccGCUGu -3'
miRNA:   3'- -GUGCGCGC------CGCGGG-GCGGGua--CGACc -5'
29589 5' -64.5 NC_006151.1 + 138984 0.66 0.489858
Target:  5'- gACGCGCcGCGCCgCGCUCAgccGCg-- -3'
miRNA:   3'- gUGCGCGcCGCGGgGCGGGUa--CGacc -5'
29589 5' -64.5 NC_006151.1 + 138158 0.67 0.470151
Target:  5'- gCGCGCGCucgaggccuucguGGCggacgugGCCauggCGCCCGUGCUGcGg -3'
miRNA:   3'- -GUGCGCG-------------CCG-------CGGg---GCGGGUACGAC-C- -5'
29589 5' -64.5 NC_006151.1 + 137997 0.66 0.535984
Target:  5'- gCACGCcCGGCGCaCgCCGUCacgcgCGUGCUGc -3'
miRNA:   3'- -GUGCGcGCCGCG-G-GGCGG-----GUACGACc -5'
29589 5' -64.5 NC_006151.1 + 137768 0.7 0.320947
Target:  5'- cCugGCGCGcGUGCUCCaGCaggCCGUGCUGc -3'
miRNA:   3'- -GugCGCGC-CGCGGGG-CG---GGUACGACc -5'
29589 5' -64.5 NC_006151.1 + 137614 0.66 0.535984
Target:  5'- gGCGCGggcggggacccCGGCGCCuCCGCCCucguccGCg-- -3'
miRNA:   3'- gUGCGC-----------GCCGCGG-GGCGGGua----CGacc -5'
29589 5' -64.5 NC_006151.1 + 137551 0.68 0.420249
Target:  5'- gACGCG-GGCGuCCCCGCCgagguguacaCGUGCg-- -3'
miRNA:   3'- gUGCGCgCCGC-GGGGCGG----------GUACGacc -5'
29589 5' -64.5 NC_006151.1 + 137316 0.67 0.463085
Target:  5'- -cCGCGCGGUGCUCgacgCGCUCGcGCUGc -3'
miRNA:   3'- guGCGCGCCGCGGG----GCGGGUaCGACc -5'
29589 5' -64.5 NC_006151.1 + 137076 0.71 0.275207
Target:  5'- gCugGCGCaccGGCGCCagGCCUucgcgGUGCUGGc -3'
miRNA:   3'- -GugCGCG---CCGCGGggCGGG-----UACGACC- -5'
29589 5' -64.5 NC_006151.1 + 137003 0.74 0.161042
Target:  5'- gCGCGCGCacggcgcugGGCGCCCUGCUCGgccUGCcGGa -3'
miRNA:   3'- -GUGCGCG---------CCGCGGGGCGGGU---ACGaCC- -5'
29589 5' -64.5 NC_006151.1 + 136942 0.69 0.342224
Target:  5'- gGCGcCGaCGGCGCcguCCUGCgCCGccUGCUGGa -3'
miRNA:   3'- gUGC-GC-GCCGCG---GGGCG-GGU--ACGACC- -5'
29589 5' -64.5 NC_006151.1 + 136866 0.66 0.542568
Target:  5'- -cCGCGUGaccgccgucgaggaGCGCCUcgCGCCCcacgGCUGGg -3'
miRNA:   3'- guGCGCGC--------------CGCGGG--GCGGGua--CGACC- -5'
29589 5' -64.5 NC_006151.1 + 136750 0.73 0.190353
Target:  5'- aGCGuCGC-GCGCCUCGCCCcgGCcaUGGg -3'
miRNA:   3'- gUGC-GCGcCGCGGGGCGGGuaCG--ACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.