miRNA display CGI


Results 21 - 40 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29589 5' -64.5 NC_006151.1 + 136671 0.75 0.142661
Target:  5'- aGCGCGCGGcCGCCgccuucuuCCGCCaCGUGCgGGc -3'
miRNA:   3'- gUGCGCGCC-GCGG--------GGCGG-GUACGaCC- -5'
29589 5' -64.5 NC_006151.1 + 136461 0.66 0.545399
Target:  5'- aGCGCGUGcGCGCCgaCCGCgCCGaGaUGGg -3'
miRNA:   3'- gUGCGCGC-CGCGG--GGCG-GGUaCgACC- -5'
29589 5' -64.5 NC_006151.1 + 136414 0.71 0.281408
Target:  5'- cUACGCGCGGgGCCCCGCggcgGCg-- -3'
miRNA:   3'- -GUGCGCGCCgCGGGGCGgguaCGacc -5'
29589 5' -64.5 NC_006151.1 + 136328 0.66 0.535984
Target:  5'- cCGCGCGUGGa-CCCCaacCCCAgcgGcCUGGa -3'
miRNA:   3'- -GUGCGCGCCgcGGGGc--GGGUa--C-GACC- -5'
29589 5' -64.5 NC_006151.1 + 136213 0.66 0.508101
Target:  5'- gGCGCGCuucGGC-CCCgaggagaagaCGCUgGUGCUGGc -3'
miRNA:   3'- gUGCGCG---CCGcGGG----------GCGGgUACGACC- -5'
29589 5' -64.5 NC_006151.1 + 134760 0.7 0.300676
Target:  5'- gCGCGCGCGGgGCCCgCGgCUUcgGCUccacGGg -3'
miRNA:   3'- -GUGCGCGCCgCGGG-GC-GGGuaCGA----CC- -5'
29589 5' -64.5 NC_006151.1 + 134623 0.66 0.498942
Target:  5'- aGCGCGUGGC-CCa-GCUgGUGCUGa -3'
miRNA:   3'- gUGCGCGCCGcGGggCGGgUACGACc -5'
29589 5' -64.5 NC_006151.1 + 134314 0.66 0.489858
Target:  5'- gCACGcCGCuGCGCCUCGCgCCggGCa-- -3'
miRNA:   3'- -GUGC-GCGcCGCGGGGCG-GGuaCGacc -5'
29589 5' -64.5 NC_006151.1 + 133757 0.66 0.525694
Target:  5'- gCGCGUGCGGaucgaucuuuauaCGCgCCGCCCc-GCgGGg -3'
miRNA:   3'- -GUGCGCGCC-------------GCGgGGCGGGuaCGaCC- -5'
29589 5' -64.5 NC_006151.1 + 133673 0.66 0.545399
Target:  5'- gGCGCgGCGGCGCgCC-CCCGagGC-GGu -3'
miRNA:   3'- gUGCG-CGCCGCGgGGcGGGUa-CGaCC- -5'
29589 5' -64.5 NC_006151.1 + 132491 0.66 0.498942
Target:  5'- gGCGCGCGuaGCGCUCCucgcgcGCCCGcaGCgUGGa -3'
miRNA:   3'- gUGCGCGC--CGCGGGG------CGGGUa-CG-ACC- -5'
29589 5' -64.5 NC_006151.1 + 132430 0.71 0.257259
Target:  5'- -uCGuCGCGGCGCgCCUGCgCGUGCaGGu -3'
miRNA:   3'- guGC-GCGCCGCG-GGGCGgGUACGaCC- -5'
29589 5' -64.5 NC_006151.1 + 132377 0.69 0.33288
Target:  5'- gGCGCGCGacgucgcgguaguaGCGCCCgCGCaCCAgcUGCcGGa -3'
miRNA:   3'- gUGCGCGC--------------CGCGGG-GCG-GGU--ACGaCC- -5'
29589 5' -64.5 NC_006151.1 + 130964 0.68 0.411972
Target:  5'- gGCGCGgGG-GCCgguaccccggCCGCCCggGCUGa -3'
miRNA:   3'- gUGCGCgCCgCGG----------GGCGGGuaCGACc -5'
29589 5' -64.5 NC_006151.1 + 130547 0.68 0.428625
Target:  5'- cCGCGCgaggGCGGCGCgcugCCGCCCcacgaGUGCaucUGGa -3'
miRNA:   3'- -GUGCG----CGCCGCGg---GGCGGG-----UACG---ACC- -5'
29589 5' -64.5 NC_006151.1 + 130493 0.72 0.234833
Target:  5'- aGCGCGCGGCGCCacaCGCCgCGcGuCUcGGg -3'
miRNA:   3'- gUGCGCGCCGCGGg--GCGG-GUaC-GA-CC- -5'
29589 5' -64.5 NC_006151.1 + 130391 0.66 0.525694
Target:  5'- --aGCGCGaaggccaGCGCCUCGCCCGcgaGCgcgGGc -3'
miRNA:   3'- gugCGCGC-------CGCGGGGCGGGUa--CGa--CC- -5'
29589 5' -64.5 NC_006151.1 + 129828 0.68 0.428625
Target:  5'- aGCGCGCGGCGgCguaGCCCAgcgacacgGcCUGGc -3'
miRNA:   3'- gUGCGCGCCGCgGgg-CGGGUa-------C-GACC- -5'
29589 5' -64.5 NC_006151.1 + 128276 0.66 0.535984
Target:  5'- gCGCGCGCaGCGCCgCGCgCAgGUacgGGu -3'
miRNA:   3'- -GUGCGCGcCGCGGgGCGgGUaCGa--CC- -5'
29589 5' -64.5 NC_006151.1 + 127488 0.67 0.471926
Target:  5'- aGC-CGCGGa-CCCCGCgCCGgaaGCUGGu -3'
miRNA:   3'- gUGcGCGCCgcGGGGCG-GGUa--CGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.