miRNA display CGI


Results 41 - 60 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29589 5' -64.5 NC_006151.1 + 125594 0.66 0.517331
Target:  5'- --aGCGCGGCacguGCUacagCCGCCC--GCUGGu -3'
miRNA:   3'- gugCGCGCCG----CGG----GGCGGGuaCGACC- -5'
29589 5' -64.5 NC_006151.1 + 125038 0.66 0.517331
Target:  5'- gACGCcaucuaccgGCGGCGCUacaacagcaCGCaCGUGCUGGc -3'
miRNA:   3'- gUGCG---------CGCCGCGGg--------GCGgGUACGACC- -5'
29589 5' -64.5 NC_006151.1 + 123850 0.71 0.263133
Target:  5'- uGCGCGgGGCGCCgUCGCgCUAgcgcugcugcUGCUGGc -3'
miRNA:   3'- gUGCGCgCCGCGG-GGCG-GGU----------ACGACC- -5'
29589 5' -64.5 NC_006151.1 + 123762 0.72 0.245274
Target:  5'- uUugGCGCGG-GCCCCgggggcaucgGCCCGggcaccacggcggUGCUGGc -3'
miRNA:   3'- -GugCGCGCCgCGGGG----------CGGGU-------------ACGACC- -5'
29589 5' -64.5 NC_006151.1 + 122832 0.7 0.318875
Target:  5'- -cCGCGCGuGCuacgaccaccacauGUCCaCGCCCAUGCUGc -3'
miRNA:   3'- guGCGCGC-CG--------------CGGG-GCGGGUACGACc -5'
29589 5' -64.5 NC_006151.1 + 122685 0.66 0.489858
Target:  5'- uGCGCGCGGCGgCCguggaGCUCGcGCUcuucGGg -3'
miRNA:   3'- gUGCGCGCCGCgGGg----CGGGUaCGA----CC- -5'
29589 5' -64.5 NC_006151.1 + 121909 0.68 0.403797
Target:  5'- gUACGCGCGG-GCCgagggggaCCGC--GUGCUGGg -3'
miRNA:   3'- -GUGCGCGCCgCGG--------GGCGggUACGACC- -5'
29589 5' -64.5 NC_006151.1 + 121506 0.69 0.372144
Target:  5'- gACaUG-GGCGCCCCGCCCGagaagcgGCUGa -3'
miRNA:   3'- gUGcGCgCCGCGGGGCGGGUa------CGACc -5'
29589 5' -64.5 NC_006151.1 + 121425 0.67 0.454332
Target:  5'- gACGuCGCGGgGCUCgCGCCgGccucGCUGGu -3'
miRNA:   3'- gUGC-GCGCCgCGGG-GCGGgUa---CGACC- -5'
29589 5' -64.5 NC_006151.1 + 120798 0.67 0.454332
Target:  5'- gACGCGgaGcGCGCCgCGCgCgagGUGCUGGa -3'
miRNA:   3'- gUGCGCg-C-CGCGGgGCGgG---UACGACC- -5'
29589 5' -64.5 NC_006151.1 + 119991 0.68 0.379898
Target:  5'- cCugGCGCGGCGCaCgCUGCUggcgGUGCUGc -3'
miRNA:   3'- -GugCGCGCCGCG-G-GGCGGg---UACGACc -5'
29589 5' -64.5 NC_006151.1 + 119527 0.69 0.349538
Target:  5'- -cCGCGCcucGCGCCCCGCCUgcGCg-- -3'
miRNA:   3'- guGCGCGc--CGCGGGGCGGGuaCGacc -5'
29589 5' -64.5 NC_006151.1 + 119377 0.73 0.199551
Target:  5'- gGCGUGCGGC-UUCUGCCCGcagcUGCUGGc -3'
miRNA:   3'- gUGCGCGCCGcGGGGCGGGU----ACGACC- -5'
29589 5' -64.5 NC_006151.1 + 119048 0.68 0.379898
Target:  5'- gACG-GCGGCGCCgcggCCGCCUccGCgGGc -3'
miRNA:   3'- gUGCgCGCCGCGG----GGCGGGuaCGaCC- -5'
29589 5' -64.5 NC_006151.1 + 118098 0.66 0.535984
Target:  5'- gAgGCGCuGCGCCgCGaCC-UGCUGGc -3'
miRNA:   3'- gUgCGCGcCGCGGgGCgGGuACGACC- -5'
29589 5' -64.5 NC_006151.1 + 117786 0.71 0.263133
Target:  5'- cCGgGCGgGGCGCCaCGCCCGgcgggGCgGGg -3'
miRNA:   3'- -GUgCGCgCCGCGGgGCGGGUa----CGaCC- -5'
29589 5' -64.5 NC_006151.1 + 117593 0.66 0.535984
Target:  5'- -cCGCGUGGCGCCgCCGCaguagaCCGUGg--- -3'
miRNA:   3'- guGCGCGCCGCGG-GGCG------GGUACgacc -5'
29589 5' -64.5 NC_006151.1 + 117147 0.66 0.545399
Target:  5'- uGCGCGaccaGGCG-CCCGCUguUGCUc- -3'
miRNA:   3'- gUGCGCg---CCGCgGGGCGGguACGAcc -5'
29589 5' -64.5 NC_006151.1 + 115809 0.66 0.545399
Target:  5'- gCGCGCGCGGaugGCCuuGCgCAUGg--- -3'
miRNA:   3'- -GUGCGCGCCg--CGGggCGgGUACgacc -5'
29589 5' -64.5 NC_006151.1 + 115545 0.7 0.314078
Target:  5'- cCACGCGCacGGCGUaCUCGCCCGcggGCgGGc -3'
miRNA:   3'- -GUGCGCG--CCGCG-GGGCGGGUa--CGaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.