miRNA display CGI


Results 61 - 80 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29589 5' -64.5 NC_006151.1 + 115130 0.73 0.214071
Target:  5'- aCGCGCGCGuGCGCCUCGgCCA-GCa-- -3'
miRNA:   3'- -GUGCGCGC-CGCGGGGCgGGUaCGacc -5'
29589 5' -64.5 NC_006151.1 + 113307 0.73 0.194904
Target:  5'- cCGCGCgGUGGaCGCCacgcugggGCCCGUGCUGGc -3'
miRNA:   3'- -GUGCG-CGCC-GCGGgg------CGGGUACGACC- -5'
29589 5' -64.5 NC_006151.1 + 113081 0.71 0.28772
Target:  5'- aGCGCGCGGCcgucGCCgCCGCCaccggggGCgGGg -3'
miRNA:   3'- gUGCGCGCCG----CGG-GGCGGgua----CGaCC- -5'
29589 5' -64.5 NC_006151.1 + 112978 0.75 0.149771
Target:  5'- gACGCGCGcGCGCCgCCgaGCCUGggggGCUGGa -3'
miRNA:   3'- gUGCGCGC-CGCGG-GG--CGGGUa---CGACC- -5'
29589 5' -64.5 NC_006151.1 + 112674 0.68 0.379898
Target:  5'- --aGCGCucGCugGCCCCGCCCugGCUGGc -3'
miRNA:   3'- gugCGCGc-CG--CGGGGCGGGuaCGACC- -5'
29589 5' -64.5 NC_006151.1 + 112618 0.67 0.480851
Target:  5'- gCugGCGCuGGacgaGCCCUGCCgCGUGUg-- -3'
miRNA:   3'- -GugCGCG-CCg---CGGGGCGG-GUACGacc -5'
29589 5' -64.5 NC_006151.1 + 112434 0.66 0.545399
Target:  5'- cCGCGcCGCcGcCGCCgCGCgCCAUggGCUGGa -3'
miRNA:   3'- -GUGC-GCGcC-GCGGgGCG-GGUA--CGACC- -5'
29589 5' -64.5 NC_006151.1 + 107608 0.68 0.395725
Target:  5'- -cCGC-CGGCGCCgCCGCCCGccaaGCccgUGGa -3'
miRNA:   3'- guGCGcGCCGCGG-GGCGGGUa---CG---ACC- -5'
29589 5' -64.5 NC_006151.1 + 107551 0.67 0.468379
Target:  5'- -cCGC-CGGCGCCgCCGCCCGccaagcccgcggaGCUGa -3'
miRNA:   3'- guGCGcGCCGCGG-GGCGGGUa------------CGACc -5'
29589 5' -64.5 NC_006151.1 + 107046 0.71 0.281408
Target:  5'- cCugGC-CGGCGagccggCCUGCCuCGUGCUGGu -3'
miRNA:   3'- -GugCGcGCCGCg-----GGGCGG-GUACGACC- -5'
29589 5' -64.5 NC_006151.1 + 106511 0.68 0.386968
Target:  5'- gCGCGCGCcgugccgGGCGCgCUgGCcaccuucaCCGUGCUGGc -3'
miRNA:   3'- -GUGCGCG-------CCGCG-GGgCG--------GGUACGACC- -5'
29589 5' -64.5 NC_006151.1 + 106368 0.69 0.356216
Target:  5'- aCGCGgGCGcGCGCCCgccgcggCGCCCGcUGCgcgacGGg -3'
miRNA:   3'- -GUGCgCGC-CGCGGG-------GCGGGU-ACGa----CC- -5'
29589 5' -64.5 NC_006151.1 + 106177 0.67 0.445669
Target:  5'- -cCGCGUcGCGCaCCCGCC---GCUGGa -3'
miRNA:   3'- guGCGCGcCGCG-GGGCGGguaCGACC- -5'
29589 5' -64.5 NC_006151.1 + 106062 0.67 0.454332
Target:  5'- uCGCGCGCuucguGCGCCaCCGCCgCGccGaCUGGg -3'
miRNA:   3'- -GUGCGCGc----CGCGG-GGCGG-GUa-C-GACC- -5'
29589 5' -64.5 NC_006151.1 + 105751 0.69 0.372144
Target:  5'- aGCGCGUGGCGgCgCGCCUggGCg-- -3'
miRNA:   3'- gUGCGCGCCGCgGgGCGGGuaCGacc -5'
29589 5' -64.5 NC_006151.1 + 105534 0.66 0.505346
Target:  5'- gCGCGCaucgggcccgagcuGCGGCacgacGCCCUGCgCGcGCUGGc -3'
miRNA:   3'- -GUGCG--------------CGCCG-----CGGGGCGgGUaCGACC- -5'
29589 5' -64.5 NC_006151.1 + 105041 0.66 0.517331
Target:  5'- gGCGCugcugcuCGGCGCCgucgaggaggCGCCCGaGCUGGa -3'
miRNA:   3'- gUGCGc------GCCGCGGg---------GCGGGUaCGACC- -5'
29589 5' -64.5 NC_006151.1 + 104722 0.67 0.463085
Target:  5'- -cUGCGCGGCGCCgUGaCCUAc-CUGGa -3'
miRNA:   3'- guGCGCGCCGCGGgGC-GGGUacGACC- -5'
29589 5' -64.5 NC_006151.1 + 104569 0.71 0.275207
Target:  5'- gGCGCGCGGCGCgCgGa-CGUGCUGc -3'
miRNA:   3'- gUGCGCGCCGCGgGgCggGUACGACc -5'
29589 5' -64.5 NC_006151.1 + 104410 0.66 0.526626
Target:  5'- gGCGUGCuGGCccGCgCCGCCgCcgGCaUGGg -3'
miRNA:   3'- gUGCGCG-CCG--CGgGGCGG-GuaCG-ACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.