miRNA display CGI


Results 81 - 100 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29589 5' -64.5 NC_006151.1 + 104272 0.67 0.480851
Target:  5'- gGCGCgGCGGCgGgCCCGCCgcUGCaGGc -3'
miRNA:   3'- gUGCG-CGCCG-CgGGGCGGguACGaCC- -5'
29589 5' -64.5 NC_006151.1 + 104187 0.68 0.420249
Target:  5'- gCGCGCGCucGGCGCCaacgCCGagaCCGUgaccacggcGCUGGa -3'
miRNA:   3'- -GUGCGCG--CCGCGG----GGCg--GGUA---------CGACC- -5'
29589 5' -64.5 NC_006151.1 + 103956 0.67 0.471926
Target:  5'- gGCGCucGCGGCGCgCCaGCgCGUcggcgaGCUGGa -3'
miRNA:   3'- gUGCG--CGCCGCGgGG-CGgGUA------CGACC- -5'
29589 5' -64.5 NC_006151.1 + 103762 0.68 0.387758
Target:  5'- gCGCGcCGCGGCGCUgCGCgagUCGgagcGCUGGc -3'
miRNA:   3'- -GUGC-GCGCCGCGGgGCG---GGUa---CGACC- -5'
29589 5' -64.5 NC_006151.1 + 103679 0.69 0.362984
Target:  5'- gCGCGCGCGGCgggggugcugcgcGCCgCCGuggagcaCCCGgaGCUGGg -3'
miRNA:   3'- -GUGCGCGCCG-------------CGG-GGC-------GGGUa-CGACC- -5'
29589 5' -64.5 NC_006151.1 + 103538 0.71 0.281408
Target:  5'- gGCGCGCuggugGGCGCCgggcagCCGCUCGgggcGCUGGu -3'
miRNA:   3'- gUGCGCG-----CCGCGG------GGCGGGUa---CGACC- -5'
29589 5' -64.5 NC_006151.1 + 103393 0.68 0.428625
Target:  5'- gCGCGCGCugcugGGCGaCUuuGCCac-GCUGGg -3'
miRNA:   3'- -GUGCGCG-----CCGC-GGggCGGguaCGACC- -5'
29589 5' -64.5 NC_006151.1 + 103308 0.68 0.395725
Target:  5'- -uCGCGCGGCGCgaCGCCgAgcugcgcacGCUGGu -3'
miRNA:   3'- guGCGCGCCGCGggGCGGgUa--------CGACC- -5'
29589 5' -64.5 NC_006151.1 + 102949 0.8 0.070964
Target:  5'- gCugGaCGCGGCGCCcgCCGCCCAcgacggcgcgcUGCUGGc -3'
miRNA:   3'- -GugC-GCGCCGCGG--GGCGGGU-----------ACGACC- -5'
29589 5' -64.5 NC_006151.1 + 102815 0.69 0.349538
Target:  5'- gGCGCGCaguacaGCGCCaaGgCCAUGCUGa -3'
miRNA:   3'- gUGCGCGc-----CGCGGggCgGGUACGACc -5'
29589 5' -64.5 NC_006151.1 + 102745 0.72 0.219109
Target:  5'- aGCGCGCGGCcaaGCUgCCGCgCAaGCUGGc -3'
miRNA:   3'- gUGCGCGCCG---CGG-GGCGgGUaCGACC- -5'
29589 5' -64.5 NC_006151.1 + 102637 0.67 0.451723
Target:  5'- gCGCGCucgagGCGGCGCUcgaggCCGCCCAcGCcaacuuugacgccgUGGa -3'
miRNA:   3'- -GUGCG-----CGCCGCGG-----GGCGGGUaCG--------------ACC- -5'
29589 5' -64.5 NC_006151.1 + 102554 0.68 0.420249
Target:  5'- gCGCGCGCGG-GCCCuguuugcgcgCGCCCGcGCg-- -3'
miRNA:   3'- -GUGCGCGCCgCGGG----------GCGGGUaCGacc -5'
29589 5' -64.5 NC_006151.1 + 102407 0.67 0.463085
Target:  5'- gGCGCGCGucgcGCGgCCCGCgaacgaggCCAUGCaccGGg -3'
miRNA:   3'- gUGCGCGC----CGCgGGGCG--------GGUACGa--CC- -5'
29589 5' -64.5 NC_006151.1 + 102369 0.67 0.463085
Target:  5'- gACGCGUccGCGCCCgUGgCCAaGCUGGc -3'
miRNA:   3'- gUGCGCGc-CGCGGG-GCgGGUaCGACC- -5'
29589 5' -64.5 NC_006151.1 + 101711 0.67 0.4371
Target:  5'- aGCGgGCGGUGCCCU--CCGUGCa-- -3'
miRNA:   3'- gUGCgCGCCGCGGGGcgGGUACGacc -5'
29589 5' -64.5 NC_006151.1 + 101291 0.68 0.420249
Target:  5'- gCGCGgGCGGCGCCgCGCUgCAcUGCg-- -3'
miRNA:   3'- -GUGCgCGCCGCGGgGCGG-GU-ACGacc -5'
29589 5' -64.5 NC_006151.1 + 100643 0.71 0.249784
Target:  5'- -cCGCGCuGCGCCgCGCCgucgacgagcgcggCGUGCUGGc -3'
miRNA:   3'- guGCGCGcCGCGGgGCGG--------------GUACGACC- -5'
29589 5' -64.5 NC_006151.1 + 100150 0.67 0.484444
Target:  5'- gCACGCGCccuccGGCGCCgccuggaggacauggCCaCCCAcacgggcgaccUGCUGGa -3'
miRNA:   3'- -GUGCGCG-----CCGCGG---------------GGcGGGU-----------ACGACC- -5'
29589 5' -64.5 NC_006151.1 + 100092 0.75 0.153446
Target:  5'- gGCGC-CGGCGCCggcgCCGCCCucGCUGGc -3'
miRNA:   3'- gUGCGcGCCGCGG----GGCGGGuaCGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.