Results 41 - 60 of 257 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29589 | 5' | -64.5 | NC_006151.1 | + | 98381 | 0.66 | 0.545399 |
Target: 5'- gCGCGCGCuGCGCCUgGCCUgccGCg-- -3' miRNA: 3'- -GUGCGCGcCGCGGGgCGGGua-CGacc -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 115809 | 0.66 | 0.545399 |
Target: 5'- gCGCGCGCGGaugGCCuuGCgCAUGg--- -3' miRNA: 3'- -GUGCGCGCCg--CGGggCGgGUACgacc -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 133673 | 0.66 | 0.545399 |
Target: 5'- gGCGCgGCGGCGCgCC-CCCGagGC-GGu -3' miRNA: 3'- gUGCG-CGCCGCGgGGcGGGUa-CGaCC- -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 136461 | 0.66 | 0.545399 |
Target: 5'- aGCGCGUGcGCGCCgaCCGCgCCGaGaUGGg -3' miRNA: 3'- gUGCGCGC-CGCGG--GGCG-GGUaCgACC- -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 11163 | 0.66 | 0.545399 |
Target: 5'- cCugGCGCGGCGCCuagacaCCGUUUcUGCa-- -3' miRNA: 3'- -GugCGCGCCGCGG------GGCGGGuACGacc -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 18697 | 0.66 | 0.545399 |
Target: 5'- gCGCGgGCGGCGCCggcgucgugacgCCGUCCAcGUa-- -3' miRNA: 3'- -GUGCgCGCCGCGG------------GGCGGGUaCGacc -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 117147 | 0.66 | 0.545399 |
Target: 5'- uGCGCGaccaGGCG-CCCGCUguUGCUc- -3' miRNA: 3'- gUGCGCg---CCGCgGGGCGGguACGAcc -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 32611 | 0.66 | 0.535984 |
Target: 5'- aGCGCGgGGCGCCgCGCCUcucccucccGCUu- -3' miRNA: 3'- gUGCGCgCCGCGGgGCGGGua-------CGAcc -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 76704 | 0.66 | 0.535984 |
Target: 5'- gGCGCGgGcGCGCCgcggCCGCCUuuuaAUGCaugaUGGa -3' miRNA: 3'- gUGCGCgC-CGCGG----GGCGGG----UACG----ACC- -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 90701 | 0.66 | 0.535984 |
Target: 5'- gGCG-GCGGaCGCgCCCGCCCc-GCaGGc -3' miRNA: 3'- gUGCgCGCC-GCG-GGGCGGGuaCGaCC- -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 99335 | 0.66 | 0.535984 |
Target: 5'- gACGCGCaGCGCgCCGUCg--GCUGc -3' miRNA: 3'- gUGCGCGcCGCGgGGCGGguaCGACc -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 118098 | 0.66 | 0.535984 |
Target: 5'- gAgGCGCuGCGCCgCGaCC-UGCUGGc -3' miRNA: 3'- gUgCGCGcCGCGGgGCgGGuACGACC- -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 128276 | 0.66 | 0.535984 |
Target: 5'- gCGCGCGCaGCGCCgCGCgCAgGUacgGGu -3' miRNA: 3'- -GUGCGCGcCGCGGgGCGgGUaCGa--CC- -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 136328 | 0.66 | 0.535984 |
Target: 5'- cCGCGCGUGGa-CCCCaacCCCAgcgGcCUGGa -3' miRNA: 3'- -GUGCGCGCCgcGGGGc--GGGUa--C-GACC- -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 141750 | 0.66 | 0.535984 |
Target: 5'- gGCGCGgGGCGCg-CGCCCcgG-UGGc -3' miRNA: 3'- gUGCGCgCCGCGggGCGGGuaCgACC- -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 117593 | 0.66 | 0.535984 |
Target: 5'- -cCGCGUGGCGCCgCCGCaguagaCCGUGg--- -3' miRNA: 3'- guGCGCGCCGCGG-GGCG------GGUACgacc -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 137614 | 0.66 | 0.535984 |
Target: 5'- gGCGCGggcggggacccCGGCGCCuCCGCCCucguccGCg-- -3' miRNA: 3'- gUGCGC-----------GCCGCGG-GGCGGGua----CGacc -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 136866 | 0.66 | 0.542568 |
Target: 5'- -cCGCGUGaccgccgucgaggaGCGCCUcgCGCCCcacgGCUGGg -3' miRNA: 3'- guGCGCGC--------------CGCGGG--GCGGGua--CGACC- -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 26327 | 0.66 | 0.545399 |
Target: 5'- aGCGCGgGGCGaggCCCGCCuCAcgggGCggcGGc -3' miRNA: 3'- gUGCGCgCCGCg--GGGCGG-GUa---CGa--CC- -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 50175 | 0.66 | 0.545399 |
Target: 5'- --aGCGCGGCcgGCCgCGCCgGUGUUc- -3' miRNA: 3'- gugCGCGCCG--CGGgGCGGgUACGAcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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