Results 101 - 120 of 257 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29589 | 5' | -64.5 | NC_006151.1 | + | 92641 | 0.66 | 0.498942 |
Target: 5'- uCAUGCGCGaCGCCggcaaggcgcUCGCCC-UGCUGc -3' miRNA: 3'- -GUGCGCGCcGCGG----------GGCGGGuACGACc -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 86235 | 0.66 | 0.498942 |
Target: 5'- -cCGCGCuGCGacaUCgGCgCCGUGCUGGc -3' miRNA: 3'- guGCGCGcCGCg--GGgCG-GGUACGACC- -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 134623 | 0.66 | 0.498942 |
Target: 5'- aGCGCGUGGC-CCa-GCUgGUGCUGa -3' miRNA: 3'- gUGCGCGCCGcGGggCGGgUACGACc -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 95440 | 0.66 | 0.498942 |
Target: 5'- gGCGaggGCGGCGCCgCGCguguCCGUG-UGGa -3' miRNA: 3'- gUGCg--CGCCGCGGgGCG----GGUACgACC- -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 76786 | 0.66 | 0.498942 |
Target: 5'- gACGCaGuCGGCGCCguacagCGCCCcgGCgagGGc -3' miRNA: 3'- gUGCG-C-GCCGCGGg-----GCGGGuaCGa--CC- -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 70498 | 0.66 | 0.511785 |
Target: 5'- cCGCGUgGUGGCGCacaccgacgccaccgCCUGCUCGUGCUa- -3' miRNA: 3'- -GUGCG-CGCCGCG---------------GGGCGGGUACGAcc -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 26388 | 0.66 | 0.517331 |
Target: 5'- gGCGgGCGGCGUccuuCCCGCCCuccucGCc-- -3' miRNA: 3'- gUGCgCGCCGCG----GGGCGGGua---CGacc -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 17945 | 0.66 | 0.535984 |
Target: 5'- aGCG-GCGGCGUCUccggCGCCCGccUGCcGGc -3' miRNA: 3'- gUGCgCGCCGCGGG----GCGGGU--ACGaCC- -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 137997 | 0.66 | 0.535984 |
Target: 5'- gCACGCcCGGCGCaCgCCGUCacgcgCGUGCUGc -3' miRNA: 3'- -GUGCGcGCCGCG-G-GGCGG-----GUACGACc -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 92237 | 0.66 | 0.535984 |
Target: 5'- gCACGCGCcGCGCaucguccaCCGCCUcUGCg-- -3' miRNA: 3'- -GUGCGCGcCGCGg-------GGCGGGuACGacc -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 104410 | 0.66 | 0.526626 |
Target: 5'- gGCGUGCuGGCccGCgCCGCCgCcgGCaUGGg -3' miRNA: 3'- gUGCGCG-CCG--CGgGGCGG-GuaCG-ACC- -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 69677 | 0.66 | 0.526626 |
Target: 5'- cCGCGCGUcagcuGCGCCUCGCCgucgAUGgUGGc -3' miRNA: 3'- -GUGCGCGc----CGCGGGGCGGg---UACgACC- -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 133757 | 0.66 | 0.525694 |
Target: 5'- gCGCGUGCGGaucgaucuuuauaCGCgCCGCCCc-GCgGGg -3' miRNA: 3'- -GUGCGCGCC-------------GCGgGGCGGGuaCGaCC- -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 74988 | 0.66 | 0.525694 |
Target: 5'- gAUGCGCGGCaucgcgcGCaCCUGCCCcaucacCUGGg -3' miRNA: 3'- gUGCGCGCCG-------CG-GGGCGGGuac---GACC- -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 130391 | 0.66 | 0.525694 |
Target: 5'- --aGCGCGaaggccaGCGCCUCGCCCGcgaGCgcgGGc -3' miRNA: 3'- gugCGCGC-------CGCGGGGCGGGUa--CGa--CC- -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 81902 | 0.66 | 0.517331 |
Target: 5'- gCGCGCcggucGCGGCGCgCCGCCUcgGa--- -3' miRNA: 3'- -GUGCG-----CGCCGCGgGGCGGGuaCgacc -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 70647 | 0.66 | 0.517331 |
Target: 5'- cCGCGCGCgaGGCGCCCguccucacgcgCGCCgCcgGCg-- -3' miRNA: 3'- -GUGCGCG--CCGCGGG-----------GCGG-GuaCGacc -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 125594 | 0.66 | 0.517331 |
Target: 5'- --aGCGCGGCacguGCUacagCCGCCC--GCUGGu -3' miRNA: 3'- gugCGCGCCG----CGG----GGCGGGuaCGACC- -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 125038 | 0.66 | 0.517331 |
Target: 5'- gACGCcaucuaccgGCGGCGCUacaacagcaCGCaCGUGCUGGc -3' miRNA: 3'- gUGCG---------CGCCGCGGg--------GCGgGUACGACC- -5' |
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29589 | 5' | -64.5 | NC_006151.1 | + | 105041 | 0.66 | 0.517331 |
Target: 5'- gGCGCugcugcuCGGCGCCgucgaggaggCGCCCGaGCUGGa -3' miRNA: 3'- gUGCGc------GCCGCGGg---------GCGGGUaCGACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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