miRNA display CGI


Results 21 - 40 of 290 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29590 3' -61.2 NC_006151.1 + 68764 0.66 0.686717
Target:  5'- -aGCCGGCGG--UGGCGC-GC-GCGGc -3'
miRNA:   3'- cgCGGUCGCUgaGCCGCGaCGaCGCC- -5'
29590 3' -61.2 NC_006151.1 + 112695 0.66 0.686717
Target:  5'- -gGCUGGCgGACUacgCGGCGCUG-UGCGc -3'
miRNA:   3'- cgCGGUCG-CUGA---GCCGCGACgACGCc -5'
29590 3' -61.2 NC_006151.1 + 118940 0.66 0.686717
Target:  5'- aGCGCC---GACgCGGCGCUGUcGCuGGa -3'
miRNA:   3'- -CGCGGucgCUGaGCCGCGACGaCG-CC- -5'
29590 3' -61.2 NC_006151.1 + 6080 0.66 0.686717
Target:  5'- aGCcCCGGCGGggCuGCuGCUGCUGCuGGg -3'
miRNA:   3'- -CGcGGUCGCUgaGcCG-CGACGACG-CC- -5'
29590 3' -61.2 NC_006151.1 + 59934 0.66 0.686717
Target:  5'- cGCGCCgucagcGGCGGCUCGcagcccucgaGCGCcacccGCagGCGGu -3'
miRNA:   3'- -CGCGG------UCGCUGAGC----------CGCGa----CGa-CGCC- -5'
29590 3' -61.2 NC_006151.1 + 119571 0.66 0.686717
Target:  5'- uGCGCCAccgcucccGCGcUUCGGCGC-GCcGaCGGa -3'
miRNA:   3'- -CGCGGU--------CGCuGAGCCGCGaCGaC-GCC- -5'
29590 3' -61.2 NC_006151.1 + 50694 0.66 0.686717
Target:  5'- cGCGgCAGCGuccacgcCUCGGCGacgGCcgccccgGCGGu -3'
miRNA:   3'- -CGCgGUCGCu------GAGCCGCga-CGa------CGCC- -5'
29590 3' -61.2 NC_006151.1 + 106894 0.66 0.686717
Target:  5'- uGCGaCCugcGCGACcCcGCGCUGCaccGCGGc -3'
miRNA:   3'- -CGC-GGu--CGCUGaGcCGCGACGa--CGCC- -5'
29590 3' -61.2 NC_006151.1 + 105763 0.66 0.677908
Target:  5'- cGCGCCugGGCGACcgcgacgucaucgcaCGGUGCgcgagGC-GCGGa -3'
miRNA:   3'- -CGCGG--UCGCUGa--------------GCCGCGa----CGaCGCC- -5'
29590 3' -61.2 NC_006151.1 + 19059 0.66 0.676928
Target:  5'- gGCGCaGGC-ACUCgGGCGC-GC-GCGGg -3'
miRNA:   3'- -CGCGgUCGcUGAG-CCGCGaCGaCGCC- -5'
29590 3' -61.2 NC_006151.1 + 104015 0.66 0.676928
Target:  5'- cGCGCCGcGCGGCggaGGUGgaGC-GCGc -3'
miRNA:   3'- -CGCGGU-CGCUGag-CCGCgaCGaCGCc -5'
29590 3' -61.2 NC_006151.1 + 98200 0.66 0.676928
Target:  5'- cGCGCCGcGCGgggucgaguGCgcggCGGCGCccGCgcGCGGa -3'
miRNA:   3'- -CGCGGU-CGC---------UGa---GCCGCGa-CGa-CGCC- -5'
29590 3' -61.2 NC_006151.1 + 85304 0.66 0.676928
Target:  5'- cGCGCgAGCaGCUCcacgGGCGCUacgcGCUGgaGGg -3'
miRNA:   3'- -CGCGgUCGcUGAG----CCGCGA----CGACg-CC- -5'
29590 3' -61.2 NC_006151.1 + 54855 0.66 0.676928
Target:  5'- aGUGCCuGGUG-CUCuGGCaGCcGCUGUGGc -3'
miRNA:   3'- -CGCGG-UCGCuGAG-CCG-CGaCGACGCC- -5'
29590 3' -61.2 NC_006151.1 + 84802 0.66 0.676928
Target:  5'- gGCGCCcgaGGCGACcgCGGCcGCggacgggGCcGCGa -3'
miRNA:   3'- -CGCGG---UCGCUGa-GCCG-CGa------CGaCGCc -5'
29590 3' -61.2 NC_006151.1 + 92204 0.66 0.676928
Target:  5'- cGCGCCGccGCGGC-C-GCGCUGgaGCa- -3'
miRNA:   3'- -CGCGGU--CGCUGaGcCGCGACgaCGcc -5'
29590 3' -61.2 NC_006151.1 + 92650 0.66 0.676928
Target:  5'- aCGCCGGCaaggcGCUCGcccUGCUGCcgGCGGc -3'
miRNA:   3'- cGCGGUCGc----UGAGCc--GCGACGa-CGCC- -5'
29590 3' -61.2 NC_006151.1 + 123902 0.66 0.676928
Target:  5'- cCGCCGuGCGGCgCGGCGgCcGUgacGCGGg -3'
miRNA:   3'- cGCGGU-CGCUGaGCCGC-GaCGa--CGCC- -5'
29590 3' -61.2 NC_006151.1 + 136809 0.66 0.676928
Target:  5'- cGCGCUcGCGGC-CGacGCGCcGC-GCGGg -3'
miRNA:   3'- -CGCGGuCGCUGaGC--CGCGaCGaCGCC- -5'
29590 3' -61.2 NC_006151.1 + 68946 0.66 0.676928
Target:  5'- gGCGCaugcGCGGCUcgCGGCGCacgGaCUcGCGGa -3'
miRNA:   3'- -CGCGgu--CGCUGA--GCCGCGa--C-GA-CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.