miRNA display CGI


Results 21 - 40 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29590 5' -54.2 NC_006151.1 + 17393 0.66 0.948101
Target:  5'- cGCaCGAcGGGGCGCguggcGCGCGGcagcaggGCCa -3'
miRNA:   3'- cCG-GCU-CCUCGUGaaa--CGCGUCa------UGG- -5'
29590 5' -54.2 NC_006151.1 + 63852 0.66 0.948101
Target:  5'- cGGCCGGgcgauGGAGUACagaacccGCGCAGcguguCCg -3'
miRNA:   3'- -CCGGCU-----CCUCGUGaaa----CGCGUCau---GG- -5'
29590 5' -54.2 NC_006151.1 + 72359 0.66 0.947667
Target:  5'- cGCCGcAGGgcAGCGCgaccucGCGCAgcgucgcGUGCCg -3'
miRNA:   3'- cCGGC-UCC--UCGUGaaa---CGCGU-------CAUGG- -5'
29590 5' -54.2 NC_006151.1 + 106290 0.66 0.947667
Target:  5'- uGGCCGGGcAGCACgaguacaugGCcaagacgcuggacGCGGUGCUg -3'
miRNA:   3'- -CCGGCUCcUCGUGaaa------CG-------------CGUCAUGG- -5'
29590 5' -54.2 NC_006151.1 + 97204 0.66 0.943649
Target:  5'- uGCCGAGGcGCACguagGCgGC-GUACa -3'
miRNA:   3'- cCGGCUCCuCGUGaaa-CG-CGuCAUGg -5'
29590 5' -54.2 NC_006151.1 + 106654 0.66 0.943649
Target:  5'- cGCCGcGGcGCACg-UGCGCGagGCCg -3'
miRNA:   3'- cCGGCuCCuCGUGaaACGCGUcaUGG- -5'
29590 5' -54.2 NC_006151.1 + 23386 0.66 0.943649
Target:  5'- cGGUCGAGGggaAGCACcc-GCGcCAGcGCUg -3'
miRNA:   3'- -CCGGCUCC---UCGUGaaaCGC-GUCaUGG- -5'
29590 5' -54.2 NC_006151.1 + 84819 0.66 0.943649
Target:  5'- cGGCCGcggacGGGGcCGCgagGUGCAGaucGCCa -3'
miRNA:   3'- -CCGGCu----CCUC-GUGaaaCGCGUCa--UGG- -5'
29590 5' -54.2 NC_006151.1 + 102212 0.66 0.943649
Target:  5'- cGGCgcccgcacccaCGGGGAgGCGCcgUGCGCcGUcGCCg -3'
miRNA:   3'- -CCG-----------GCUCCU-CGUGaaACGCGuCA-UGG- -5'
29590 5' -54.2 NC_006151.1 + 104066 0.66 0.943649
Target:  5'- cGGCCGAcGcGGCGC--UGCGCcGcGCCg -3'
miRNA:   3'- -CCGGCU-CcUCGUGaaACGCGuCaUGG- -5'
29590 5' -54.2 NC_006151.1 + 106758 0.66 0.943649
Target:  5'- cGCCGAGcAGCGCgacGCGCgugAGcGCCu -3'
miRNA:   3'- cCGGCUCcUCGUGaaaCGCG---UCaUGG- -5'
29590 5' -54.2 NC_006151.1 + 121297 0.66 0.943649
Target:  5'- uGGCCGAccgcgacGGGCGCUggaGCGUGGaggcgGCCg -3'
miRNA:   3'- -CCGGCUc------CUCGUGAaa-CGCGUCa----UGG- -5'
29590 5' -54.2 NC_006151.1 + 6221 0.66 0.943649
Target:  5'- cGCCgGAGGAGcCGCg--GCGCcgGGaGCCc -3'
miRNA:   3'- cCGG-CUCCUC-GUGaaaCGCG--UCaUGG- -5'
29590 5' -54.2 NC_006151.1 + 17433 0.66 0.940861
Target:  5'- aGCCG-GGGGCGaucuccgaggaGCGCAGcACCa -3'
miRNA:   3'- cCGGCuCCUCGUgaaa-------CGCGUCaUGG- -5'
29590 5' -54.2 NC_006151.1 + 18307 0.66 0.938954
Target:  5'- aGCCGGagcGGGGCGCcuccucgggGCGCAcGUACa -3'
miRNA:   3'- cCGGCU---CCUCGUGaaa------CGCGU-CAUGg -5'
29590 5' -54.2 NC_006151.1 + 3746 0.66 0.938954
Target:  5'- cGGCgGGGGAGCug---GCGUA--GCCg -3'
miRNA:   3'- -CCGgCUCCUCGugaaaCGCGUcaUGG- -5'
29590 5' -54.2 NC_006151.1 + 88639 0.66 0.938954
Target:  5'- uGGCUguacagGAGGAGCGagacguugGCGCuccggaccucGGUGCCg -3'
miRNA:   3'- -CCGG------CUCCUCGUgaaa----CGCG----------UCAUGG- -5'
29590 5' -54.2 NC_006151.1 + 39319 0.66 0.938471
Target:  5'- cGCCGuGGAGUaccucugcucgcgGCUcggcgcgGCGCGGcGCCg -3'
miRNA:   3'- cCGGCuCCUCG-------------UGAaa-----CGCGUCaUGG- -5'
29590 5' -54.2 NC_006151.1 + 71807 0.66 0.934016
Target:  5'- uGGCCGAGcucGCGCgugGCGC--UGCCc -3'
miRNA:   3'- -CCGGCUCcu-CGUGaaaCGCGucAUGG- -5'
29590 5' -54.2 NC_006151.1 + 139087 0.66 0.934016
Target:  5'- cGCCuGGGGGCGCgcaugGCGCuGUucacgACCc -3'
miRNA:   3'- cCGGcUCCUCGUGaaa--CGCGuCA-----UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.