miRNA display CGI


Results 1 - 20 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29591 3' -67.4 NC_006151.1 + 139135 0.66 0.430767
Target:  5'- --gCCCCgugCGCCCUCgUCUUCC-CGCu -3'
miRNA:   3'- cagGGGGa--GCGGGGGgGGAGGGaGCG- -5'
29591 3' -67.4 NC_006151.1 + 84181 0.66 0.430767
Target:  5'- -gCCUCCUCGCCgCCgCCgugCCCcCGg -3'
miRNA:   3'- caGGGGGAGCGGgGGgGGa--GGGaGCg -5'
29591 3' -67.4 NC_006151.1 + 44946 0.66 0.430767
Target:  5'- --gCCCaCUCGaCCCCCCCgg-CUCGCc -3'
miRNA:   3'- cagGGG-GAGCgGGGGGGGaggGAGCG- -5'
29591 3' -67.4 NC_006151.1 + 50401 0.66 0.427463
Target:  5'- gGUCCUCgCgCGgCCCCCCCgacgaggaggcgcCCCUgCGCg -3'
miRNA:   3'- -CAGGGG-GaGCgGGGGGGGa------------GGGA-GCG- -5'
29591 3' -67.4 NC_006151.1 + 14760 0.66 0.422535
Target:  5'- -aCCCCCUC-CCaCCCCgUUCCCaccacccCGCc -3'
miRNA:   3'- caGGGGGAGcGG-GGGGgGAGGGa------GCG- -5'
29591 3' -67.4 NC_006151.1 + 21223 0.66 0.422535
Target:  5'- -aCCCCUUCGCCCCCCUCagg--CGg -3'
miRNA:   3'- caGGGGGAGCGGGGGGGGagggaGCg -5'
29591 3' -67.4 NC_006151.1 + 41430 0.66 0.422535
Target:  5'- cGUCCCCaCUCccaGCCUCCCCCgcugCCaC-CGa -3'
miRNA:   3'- -CAGGGG-GAG---CGGGGGGGGa---GG-GaGCg -5'
29591 3' -67.4 NC_006151.1 + 12551 0.66 0.414398
Target:  5'- uUCCUCUUCGUCCUCCggaCCCUCGg -3'
miRNA:   3'- cAGGGGGAGCGGGGGGggaGGGAGCg -5'
29591 3' -67.4 NC_006151.1 + 10270 0.66 0.411976
Target:  5'- uGUCCUCCUCGCCggCUCCCaggcggcgggcacgUCCCgCGUc -3'
miRNA:   3'- -CAGGGGGAGCGGg-GGGGG--------------AGGGaGCG- -5'
29591 3' -67.4 NC_006151.1 + 7586 0.66 0.411976
Target:  5'- uUCCCCCUCcucgagaccccugaGaCCCCCgagaCCCUCCC--GCg -3'
miRNA:   3'- cAGGGGGAG--------------C-GGGGG----GGGAGGGagCG- -5'
29591 3' -67.4 NC_006151.1 + 8290 0.66 0.406359
Target:  5'- uGUCCCCgCgcgggcgccgCGUCCCgCCCCgagccCCCggggCGCg -3'
miRNA:   3'- -CAGGGG-Ga---------GCGGGG-GGGGa----GGGa---GCG- -5'
29591 3' -67.4 NC_006151.1 + 46831 0.66 0.406359
Target:  5'- -gCCCCCgagaccgcCGCCCCCCggggcgggCCUCCggCGUc -3'
miRNA:   3'- caGGGGGa-------GCGGGGGG--------GGAGGgaGCG- -5'
29591 3' -67.4 NC_006151.1 + 12082 0.66 0.406359
Target:  5'- cUCCCCgaccuCUCuCaCCCgCCCUCCCgCGCu -3'
miRNA:   3'- cAGGGG-----GAGcG-GGGgGGGAGGGaGCG- -5'
29591 3' -67.4 NC_006151.1 + 79966 0.66 0.40556
Target:  5'- -aCCCCUUagaGaCCCCuuagagaCCCCUUCCUCGg -3'
miRNA:   3'- caGGGGGAg--C-GGGG-------GGGGAGGGAGCg -5'
29591 3' -67.4 NC_006151.1 + 123993 0.66 0.403171
Target:  5'- cGUCCCUCgaggagaucgaggCGUUCuCCCCCggcCCCUCGg -3'
miRNA:   3'- -CAGGGGGa------------GCGGG-GGGGGa--GGGAGCg -5'
29591 3' -67.4 NC_006151.1 + 101115 0.66 0.398418
Target:  5'- cGUCUCgugCCUgCGCUCCUCCCUCuCCUuccUGCg -3'
miRNA:   3'- -CAGGG---GGA-GCGGGGGGGGAG-GGA---GCG- -5'
29591 3' -67.4 NC_006151.1 + 59322 0.66 0.398418
Target:  5'- ---gCCCgCGCCCCCgCCCgCCCccagCGCg -3'
miRNA:   3'- caggGGGaGCGGGGG-GGGaGGGa---GCG- -5'
29591 3' -67.4 NC_006151.1 + 109884 0.66 0.390577
Target:  5'- cGUCCCUCcCGCCCa-UCCUCCgC-CGCg -3'
miRNA:   3'- -CAGGGGGaGCGGGggGGGAGG-GaGCG- -5'
29591 3' -67.4 NC_006151.1 + 37906 0.66 0.390577
Target:  5'- -gCCCUCUgCGCCCgCgUCCCgccgCCUUCGCc -3'
miRNA:   3'- caGGGGGA-GCGGG-G-GGGGa---GGGAGCG- -5'
29591 3' -67.4 NC_006151.1 + 107957 0.66 0.389799
Target:  5'- -gCCCCCgUCggcccagGCCCCCCCUgcccagaagCCCccggCGCa -3'
miRNA:   3'- caGGGGG-AG-------CGGGGGGGGa--------GGGa---GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.