miRNA display CGI


Results 1 - 20 of 159 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29591 5' -42.9 NC_006151.1 + 80320 0.67 1
Target:  5'- uCCGcaggaguuuUGggGGGAccGGGGCGAGGGcgGCu -3'
miRNA:   3'- -GGC---------ACuuCCUU--UUUUGCUCUCuuUGc -5'
29591 5' -42.9 NC_006151.1 + 133506 0.66 1
Target:  5'- gCGcGggGGGc---GCGGGAGGAGCc -3'
miRNA:   3'- gGCaCuuCCUuuuuUGCUCUCUUUGc -5'
29591 5' -42.9 NC_006151.1 + 78370 0.66 1
Target:  5'- aCGacGGAGGAGAAGG-GGGAGGAGgGg -3'
miRNA:   3'- gGCa-CUUCCUUUUUUgCUCUCUUUgC- -5'
29591 5' -42.9 NC_006151.1 + 13095 0.66 1
Target:  5'- uCCGgGAAGGGAGAGgucGCGGcGGGucACGc -3'
miRNA:   3'- -GGCaCUUCCUUUUU---UGCU-CUCuuUGC- -5'
29591 5' -42.9 NC_006151.1 + 93874 0.66 1
Target:  5'- gCGUGcgGAGGuacGAGAugGAGGcGAACGa -3'
miRNA:   3'- gGCAC--UUCCu--UUUUugCUCUcUUUGC- -5'
29591 5' -42.9 NC_006151.1 + 127379 0.67 1
Target:  5'- aCCGcGggGGu---GGCGGGGGccGCGg -3'
miRNA:   3'- -GGCaCuuCCuuuuUUGCUCUCuuUGC- -5'
29591 5' -42.9 NC_006151.1 + 15853 0.67 1
Target:  5'- ---aGAcGGAGAGGGCGAGGaGGGCGg -3'
miRNA:   3'- ggcaCUuCCUUUUUUGCUCUcUUUGC- -5'
29591 5' -42.9 NC_006151.1 + 76284 0.67 1
Target:  5'- gCGUuGAGGGAGcgGCGAucGAGGCGc -3'
miRNA:   3'- gGCAcUUCCUUUuuUGCUcuCUUUGC- -5'
29591 5' -42.9 NC_006151.1 + 111827 0.67 1
Target:  5'- cCCGUGGAccuGGAAGAcgcaccGCGucGGGggGCGc -3'
miRNA:   3'- -GGCACUU---CCUUUUu-----UGCu-CUCuuUGC- -5'
29591 5' -42.9 NC_006151.1 + 142381 0.66 1
Target:  5'- uUGgggGaAAGGggGGAACGAGGGGGuUGg -3'
miRNA:   3'- gGCa--C-UUCCuuUUUUGCUCUCUUuGC- -5'
29591 5' -42.9 NC_006151.1 + 142433 0.66 1
Target:  5'- uUGgggGaAAGGggGGAACGAGGGGGuUGg -3'
miRNA:   3'- gGCa--C-UUCCuuUUUUGCUCUCUUuGC- -5'
29591 5' -42.9 NC_006151.1 + 142485 0.66 1
Target:  5'- uUGgggGaAAGGggGGAACGAGGGGGuUGg -3'
miRNA:   3'- gGCa--C-UUCCuuUUUUGCUCUCUUuGC- -5'
29591 5' -42.9 NC_006151.1 + 33233 0.66 1
Target:  5'- cCCGgcgggcgGGAGGggGuc-CGGGGGAAGgGu -3'
miRNA:   3'- -GGCa------CUUCCuuUuuuGCUCUCUUUgC- -5'
29591 5' -42.9 NC_006151.1 + 14499 0.66 1
Target:  5'- gUCG-GGAGGGAu---CGGGGGAAGgGg -3'
miRNA:   3'- -GGCaCUUCCUUuuuuGCUCUCUUUgC- -5'
29591 5' -42.9 NC_006151.1 + 82885 0.66 1
Target:  5'- gCG-GguGGGAGGGGCGAGGGucACa -3'
miRNA:   3'- gGCaCuuCCUUUUUUGCUCUCuuUGc -5'
29591 5' -42.9 NC_006151.1 + 80255 0.66 1
Target:  5'- gCgGUGGGaGAGAGGGCGAcGAGGGuACGg -3'
miRNA:   3'- -GgCACUUcCUUUUUUGCU-CUCUU-UGC- -5'
29591 5' -42.9 NC_006151.1 + 44392 0.66 1
Target:  5'- gCCGcGggGGcgccGAGGAGgGAGGGgcGCGu -3'
miRNA:   3'- -GGCaCuuCC----UUUUUUgCUCUCuuUGC- -5'
29591 5' -42.9 NC_006151.1 + 30423 0.66 1
Target:  5'- ---aGGAGGGGAGGACG-GAG-GGCGa -3'
miRNA:   3'- ggcaCUUCCUUUUUUGCuCUCuUUGC- -5'
29591 5' -42.9 NC_006151.1 + 23139 0.66 1
Target:  5'- uCCGUcgccgggcccucGgcGGGAGcgGCGGGAGAGcccACGa -3'
miRNA:   3'- -GGCA------------CuuCCUUUuuUGCUCUCUU---UGC- -5'
29591 5' -42.9 NC_006151.1 + 142537 0.66 1
Target:  5'- uUGgggGaAAGGggGGAACGAGGGGGuUGg -3'
miRNA:   3'- gGCa--C-UUCCuuUUUUGCUCUCUUuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.