miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29592 3' -53.7 NC_006151.1 + 106496 0.66 0.955646
Target:  5'- --aCGGGcCAGCGGcUGGCGCGCgcCGu -3'
miRNA:   3'- cugGUUC-GUCGUCuACUGCGCGaaGC- -5'
29592 3' -53.7 NC_006151.1 + 93995 0.66 0.955646
Target:  5'- cACCuuGCGGCGGAUGGCcucgucccgcaGCGCcgCGc -3'
miRNA:   3'- cUGGuuCGUCGUCUACUG-----------CGCGaaGC- -5'
29592 3' -53.7 NC_006151.1 + 104549 0.66 0.955646
Target:  5'- aGGCCGAGCuGGCcgcccugGGCGCGCggCGc -3'
miRNA:   3'- -CUGGUUCG-UCGucua---CUGCGCGaaGC- -5'
29592 3' -53.7 NC_006151.1 + 100235 0.66 0.955646
Target:  5'- uGGCCGAGC-GCGug-GugGCGCU-CGa -3'
miRNA:   3'- -CUGGUUCGuCGUcuaCugCGCGAaGC- -5'
29592 3' -53.7 NC_006151.1 + 102433 0.66 0.951569
Target:  5'- aGGCCAuGCAcCGGGcgcugGACGCGCU-CGa -3'
miRNA:   3'- -CUGGUuCGUcGUCUa----CUGCGCGAaGC- -5'
29592 3' -53.7 NC_006151.1 + 117071 0.66 0.951569
Target:  5'- -gUCGAGCAGCAG---GCGCGUggUCGc -3'
miRNA:   3'- cuGGUUCGUCGUCuacUGCGCGa-AGC- -5'
29592 3' -53.7 NC_006151.1 + 84766 0.66 0.951569
Target:  5'- cGCCGAGgaGGCGGAcgcGGCGCGCgcCGc -3'
miRNA:   3'- cUGGUUCg-UCGUCUa--CUGCGCGaaGC- -5'
29592 3' -53.7 NC_006151.1 + 84831 0.66 0.951149
Target:  5'- gGGCCGcgAGguGCAGAUcgccaagaacgacGugGCGCU-CGc -3'
miRNA:   3'- -CUGGU--UCguCGUCUA-------------CugCGCGAaGC- -5'
29592 3' -53.7 NC_006151.1 + 53230 0.66 0.951149
Target:  5'- uGAUCAGGUacgugAGCAGGuucucgcUGGCGCGCacgCGg -3'
miRNA:   3'- -CUGGUUCG-----UCGUCU-------ACUGCGCGaa-GC- -5'
29592 3' -53.7 NC_006151.1 + 75585 0.66 0.950299
Target:  5'- cACCAGGCGGUcgccgacgacgacgAGGUcGGCGCGCa--- -3'
miRNA:   3'- cUGGUUCGUCG--------------UCUA-CUGCGCGaagc -5'
29592 3' -53.7 NC_006151.1 + 105002 0.66 0.950299
Target:  5'- cGACCGGGCcgccuccgcggaggAGCuGGUGACGCagGCggCGc -3'
miRNA:   3'- -CUGGUUCG--------------UCGuCUACUGCG--CGaaGC- -5'
29592 3' -53.7 NC_006151.1 + 133180 0.66 0.94725
Target:  5'- cGGCCAcGCGucccacggccgcGCAGAaGAUGCGCUUg- -3'
miRNA:   3'- -CUGGUuCGU------------CGUCUaCUGCGCGAAgc -5'
29592 3' -53.7 NC_006151.1 + 86560 0.66 0.94725
Target:  5'- cGCCGuuccGGCAGCucucggcGcgGGCGCGCUcCGa -3'
miRNA:   3'- cUGGU----UCGUCGu------CuaCUGCGCGAaGC- -5'
29592 3' -53.7 NC_006151.1 + 74584 0.66 0.94725
Target:  5'- -cCCGGGCAGCGugaacucgccGAUGAgGCGCcgCa -3'
miRNA:   3'- cuGGUUCGUCGU----------CUACUgCGCGaaGc -5'
29592 3' -53.7 NC_006151.1 + 38137 0.66 0.94725
Target:  5'- cGGCCGAGCGGCGGcaGGC-CGCggacucugUCGc -3'
miRNA:   3'- -CUGGUUCGUCGUCuaCUGcGCGa-------AGC- -5'
29592 3' -53.7 NC_006151.1 + 64537 0.66 0.946804
Target:  5'- cGGCCGcgucgggGGCGGCgAGGccgUGGCGCGCcagcUCGa -3'
miRNA:   3'- -CUGGU-------UCGUCG-UCU---ACUGCGCGa---AGC- -5'
29592 3' -53.7 NC_006151.1 + 124868 0.66 0.937867
Target:  5'- uGGCCAAGUGGCgcgaggccgaggAGAUGACcCGCgaCGa -3'
miRNA:   3'- -CUGGUUCGUCG------------UCUACUGcGCGaaGC- -5'
29592 3' -53.7 NC_006151.1 + 19251 0.66 0.937372
Target:  5'- aGCCGAGCgcguggaAGCGGGgcucgUGGCGCGCg--- -3'
miRNA:   3'- cUGGUUCG-------UCGUCU-----ACUGCGCGaagc -5'
29592 3' -53.7 NC_006151.1 + 104705 0.67 0.932799
Target:  5'- uGCCGAGCAccgagcugcugcGCGGcgccGUGACcuaccuggaGCGCUUCGa -3'
miRNA:   3'- cUGGUUCGU------------CGUC----UACUG---------CGCGAAGC- -5'
29592 3' -53.7 NC_006151.1 + 72170 0.67 0.932799
Target:  5'- cGCCGAGCAGCGGcggGACGagGCa--- -3'
miRNA:   3'- cUGGUUCGUCGUCua-CUGCg-CGaagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.