miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29592 5' -56.7 NC_006151.1 + 95670 0.66 0.909292
Target:  5'- aCUUGacgGCGCGcUCGcCGUCCaGGugCCg -3'
miRNA:   3'- -GAGCa--CGUGC-AGUaGCAGGgCCugGG- -5'
29592 5' -56.7 NC_006151.1 + 135467 0.66 0.909292
Target:  5'- --gGUGCGCGcCAgcgUGUCCgcgCGGGCCa -3'
miRNA:   3'- gagCACGUGCaGUa--GCAGG---GCCUGGg -5'
29592 5' -56.7 NC_006151.1 + 97844 0.66 0.909292
Target:  5'- -aCGUGCGCGcgcagcgCGUCGUCCgCGuuCUCg -3'
miRNA:   3'- gaGCACGUGCa------GUAGCAGG-GCcuGGG- -5'
29592 5' -56.7 NC_006151.1 + 135885 0.66 0.909292
Target:  5'- -gCGUGCGgccCGUguUCGUCgCCGccgcGACCCc -3'
miRNA:   3'- gaGCACGU---GCAguAGCAG-GGC----CUGGG- -5'
29592 5' -56.7 NC_006151.1 + 128579 0.66 0.909292
Target:  5'- cCUCGg--GCGaCAUCGUCUCGcgcGGCCCg -3'
miRNA:   3'- -GAGCacgUGCaGUAGCAGGGC---CUGGG- -5'
29592 5' -56.7 NC_006151.1 + 50629 0.66 0.903232
Target:  5'- -gCGUGCACGcC-UCGgcgacggCCgcgggCGGACCCg -3'
miRNA:   3'- gaGCACGUGCaGuAGCa------GG-----GCCUGGG- -5'
29592 5' -56.7 NC_006151.1 + 30501 0.66 0.903232
Target:  5'- uUCGcGCACGcUCAcUCG-CCCGcACCCc -3'
miRNA:   3'- gAGCaCGUGC-AGU-AGCaGGGCcUGGG- -5'
29592 5' -56.7 NC_006151.1 + 84331 0.66 0.903232
Target:  5'- -cCGUGCGCGgccucgccgaGUaCGUCgCCGG-CCCg -3'
miRNA:   3'- gaGCACGUGCag--------UA-GCAG-GGCCuGGG- -5'
29592 5' -56.7 NC_006151.1 + 101564 0.66 0.903232
Target:  5'- -aCGUGUACGcgCA-CGUCgCGGGCUa -3'
miRNA:   3'- gaGCACGUGCa-GUaGCAGgGCCUGGg -5'
29592 5' -56.7 NC_006151.1 + 26595 0.66 0.902614
Target:  5'- cCUCGggggGCucaaacACGUCGUCGUCgcccacgCUGGcCCCg -3'
miRNA:   3'- -GAGCa---CG------UGCAGUAGCAG-------GGCCuGGG- -5'
29592 5' -56.7 NC_006151.1 + 91218 0.66 0.899488
Target:  5'- aCUCGUGCuuguagacgcaggcgACGcUCGggGagCCGGGCCCc -3'
miRNA:   3'- -GAGCACG---------------UGC-AGUagCagGGCCUGGG- -5'
29592 5' -56.7 NC_006151.1 + 86947 0.66 0.896947
Target:  5'- gCUCG-GCGC--CAUCGUCUCGGccGCCa -3'
miRNA:   3'- -GAGCaCGUGcaGUAGCAGGGCC--UGGg -5'
29592 5' -56.7 NC_006151.1 + 7244 0.66 0.896947
Target:  5'- -gUGUGCACGUCAuuugcaugcUCGcCCCacguGGccGCCCu -3'
miRNA:   3'- gaGCACGUGCAGU---------AGCaGGG----CC--UGGG- -5'
29592 5' -56.7 NC_006151.1 + 102095 0.66 0.89044
Target:  5'- gCUCGaggaGCACGUgGUCGcgugCgCGGGCCg -3'
miRNA:   3'- -GAGCa---CGUGCAgUAGCa---GgGCCUGGg -5'
29592 5' -56.7 NC_006151.1 + 123762 0.66 0.89044
Target:  5'- uUUG-GCGCGggccccgggggCAUCGgCCCGGGCaCCa -3'
miRNA:   3'- gAGCaCGUGCa----------GUAGCaGGGCCUG-GG- -5'
29592 5' -56.7 NC_006151.1 + 128505 0.66 0.89044
Target:  5'- gCUCGUcaGCACGagCAccUCG-CCCGaGCCCg -3'
miRNA:   3'- -GAGCA--CGUGCa-GU--AGCaGGGCcUGGG- -5'
29592 5' -56.7 NC_006151.1 + 7785 0.66 0.89044
Target:  5'- cCUCGaGCcCGgaccCG-CCCGGACCCg -3'
miRNA:   3'- -GAGCaCGuGCaguaGCaGGGCCUGGG- -5'
29592 5' -56.7 NC_006151.1 + 28129 0.66 0.89044
Target:  5'- gCUCGggGCGCGcUCcgCGccucUCCCGGucgauCCCc -3'
miRNA:   3'- -GAGCa-CGUGC-AGuaGC----AGGGCCu----GGG- -5'
29592 5' -56.7 NC_006151.1 + 132263 0.66 0.883714
Target:  5'- aCUCGUaGCGCaGggaCAUgaacaCGUCCUGGGCCa -3'
miRNA:   3'- -GAGCA-CGUG-Ca--GUA-----GCAGGGCCUGGg -5'
29592 5' -56.7 NC_006151.1 + 116926 0.66 0.883714
Target:  5'- -aCGgGC-CGUCcUCGUCgCGGGCCa -3'
miRNA:   3'- gaGCaCGuGCAGuAGCAGgGCCUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.