miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29593 3' -55.9 NC_006151.1 + 59219 0.66 0.891453
Target:  5'- uGGGCCCCGGGaaCGUCUGccggcugcGGCCg-- -3'
miRNA:   3'- uUUUGGGGCUCaaGCAGGC--------CCGGaaa -5'
29593 3' -55.9 NC_006151.1 + 8319 0.66 0.884501
Target:  5'- cGAGCCCCcGGggCG-CgCGGGCCUc- -3'
miRNA:   3'- uUUUGGGGcUCaaGCaG-GCCCGGAaa -5'
29593 3' -55.9 NC_006151.1 + 110425 0.66 0.884501
Target:  5'- gGGAGCUCgGGGcccgaGUCCGGGCCc-- -3'
miRNA:   3'- -UUUUGGGgCUCaag--CAGGCCCGGaaa -5'
29593 3' -55.9 NC_006151.1 + 11003 0.66 0.880217
Target:  5'- gGGGGCCCCGGcucgcccgcccgcucGcUCG-CCGGGCCg-- -3'
miRNA:   3'- -UUUUGGGGCU---------------CaAGCaGGCCCGGaaa -5'
29593 3' -55.9 NC_006151.1 + 96159 0.66 0.877316
Target:  5'- aAAGACCUCGGGccacgCGUCCGaGCCg-- -3'
miRNA:   3'- -UUUUGGGGCUCaa---GCAGGCcCGGaaa -5'
29593 3' -55.9 NC_006151.1 + 127720 0.66 0.869904
Target:  5'- gGAGGCCCCGGcGUcccCGUCgCGGGCg--- -3'
miRNA:   3'- -UUUUGGGGCU-CAa--GCAG-GCCCGgaaa -5'
29593 3' -55.9 NC_006151.1 + 44176 0.66 0.869904
Target:  5'- gGGAGCaCCgCGGGUcgcCGUCCGGGCg--- -3'
miRNA:   3'- -UUUUG-GG-GCUCAa--GCAGGCCCGgaaa -5'
29593 3' -55.9 NC_006151.1 + 58874 0.66 0.86227
Target:  5'- --cGCgCCGGGUcCGUCCaGGCCg-- -3'
miRNA:   3'- uuuUGgGGCUCAaGCAGGcCCGGaaa -5'
29593 3' -55.9 NC_006151.1 + 75203 0.66 0.85442
Target:  5'- uGAGCCCgaCGAGggCGUCgGGGCg--- -3'
miRNA:   3'- uUUUGGG--GCUCaaGCAGgCCCGgaaa -5'
29593 3' -55.9 NC_006151.1 + 72728 0.67 0.846362
Target:  5'- -cGGCCCCGAGgggCGUCCGcagcagcGCCg-- -3'
miRNA:   3'- uuUUGGGGCUCaa-GCAGGCc------CGGaaa -5'
29593 3' -55.9 NC_006151.1 + 28519 0.67 0.838101
Target:  5'- -cGGCCCgCGGGacgggCGUCCGGGaCCg-- -3'
miRNA:   3'- uuUUGGG-GCUCaa---GCAGGCCC-GGaaa -5'
29593 3' -55.9 NC_006151.1 + 28800 0.67 0.838101
Target:  5'- -cGGCCCgCGGGacgggCGUCCGGGaCCg-- -3'
miRNA:   3'- uuUUGGG-GCUCaa---GCAGGCCC-GGaaa -5'
29593 3' -55.9 NC_006151.1 + 141810 0.67 0.829646
Target:  5'- --cGCCCCGAGggCa--CGGGCCg-- -3'
miRNA:   3'- uuuUGGGGCUCaaGcagGCCCGGaaa -5'
29593 3' -55.9 NC_006151.1 + 139599 0.67 0.821004
Target:  5'- ---cCCCCGAGcggcggccCGUCCGGGCg--- -3'
miRNA:   3'- uuuuGGGGCUCaa------GCAGGCCCGgaaa -5'
29593 3' -55.9 NC_006151.1 + 128821 0.67 0.812184
Target:  5'- -uGGCCCCGuacgcggCGcUCUGGGCCUUg -3'
miRNA:   3'- uuUUGGGGCucaa---GC-AGGCCCGGAAa -5'
29593 3' -55.9 NC_006151.1 + 102136 0.68 0.794043
Target:  5'- ---uCCCCGGGcgCG-CCGGGCUg-- -3'
miRNA:   3'- uuuuGGGGCUCaaGCaGGCCCGGaaa -5'
29593 3' -55.9 NC_006151.1 + 123769 0.68 0.794043
Target:  5'- cGGGCCCCGGGggcaUCGgcCCGGGCa--- -3'
miRNA:   3'- uUUUGGGGCUCa---AGCa-GGCCCGgaaa -5'
29593 3' -55.9 NC_006151.1 + 15025 0.68 0.775296
Target:  5'- -cGACCCCGAGgaggugcgCGUCCacggcgcgcgGGGCCc-- -3'
miRNA:   3'- uuUUGGGGCUCaa------GCAGG----------CCCGGaaa -5'
29593 3' -55.9 NC_006151.1 + 8190 0.7 0.643937
Target:  5'- cGGGACCCCGGGggCGcUCCGGGagaCg-- -3'
miRNA:   3'- -UUUUGGGGCUCaaGC-AGGCCCg--Gaaa -5'
29593 3' -55.9 NC_006151.1 + 22312 0.71 0.612652
Target:  5'- --cGCgCCGAGcgUCGUCCGGGCg--- -3'
miRNA:   3'- uuuUGgGGCUCa-AGCAGGCCCGgaaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.