miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29593 5' -55.8 NC_006151.1 + 19859 0.66 0.909671
Target:  5'- gCGGAgAGGCUCGGgGccucGGUGgAGAGCg -3'
miRNA:   3'- -GUUUgUCCGGGCCgCc---CUACaUCUCG- -5'
29593 5' -55.8 NC_006151.1 + 52383 0.66 0.909671
Target:  5'- ----gGGGCCC-GCGGGGgcGgcGGGCg -3'
miRNA:   3'- guuugUCCGGGcCGCCCUa-CauCUCG- -5'
29593 5' -55.8 NC_006151.1 + 23447 0.66 0.909671
Target:  5'- gAGGguGGCCCcggGGCGGGugaucGU-GAGCc -3'
miRNA:   3'- gUUUguCCGGG---CCGCCCua---CAuCUCG- -5'
29593 5' -55.8 NC_006151.1 + 63501 0.66 0.903468
Target:  5'- gAAGguGGCCaGGUGGGGgcgcGcGGGGCg -3'
miRNA:   3'- gUUUguCCGGgCCGCCCUa---CaUCUCG- -5'
29593 5' -55.8 NC_006151.1 + 3240 0.66 0.897027
Target:  5'- cCAGGC-GGCgCGGCGGcGGaGcGGGGCg -3'
miRNA:   3'- -GUUUGuCCGgGCCGCC-CUaCaUCUCG- -5'
29593 5' -55.8 NC_006151.1 + 23923 0.66 0.897027
Target:  5'- -cGACGGGCCgccggucgucgUGGaCGGGGUGccguagcAGAGCu -3'
miRNA:   3'- guUUGUCCGG-----------GCC-GCCCUACa------UCUCG- -5'
29593 5' -55.8 NC_006151.1 + 122679 0.66 0.897027
Target:  5'- cCGAGguGcGCgCGGCGGcc-GUGGAGCu -3'
miRNA:   3'- -GUUUguC-CGgGCCGCCcuaCAUCUCG- -5'
29593 5' -55.8 NC_006151.1 + 55409 0.66 0.896371
Target:  5'- gCGAGCAGGCCCugcgcgccgcgcaGGCGGGcgcGgacgGGAccgGCg -3'
miRNA:   3'- -GUUUGUCCGGG-------------CCGCCCua-Ca---UCU---CG- -5'
29593 5' -55.8 NC_006151.1 + 93746 0.66 0.890353
Target:  5'- --uGCGGGCCuCGuCGGGgcGcGGGGCg -3'
miRNA:   3'- guuUGUCCGG-GCcGCCCuaCaUCUCG- -5'
29593 5' -55.8 NC_006151.1 + 96827 0.66 0.890353
Target:  5'- -cGGCGGGCCCGccaaUGGGGgaaAGGGCg -3'
miRNA:   3'- guUUGUCCGGGCc---GCCCUacaUCUCG- -5'
29593 5' -55.8 NC_006151.1 + 104011 0.66 0.890353
Target:  5'- gAGGCGcGCCgcgCGGCGGag-GUGGAGCg -3'
miRNA:   3'- gUUUGUcCGG---GCCGCCcuaCAUCUCG- -5'
29593 5' -55.8 NC_006151.1 + 130990 0.66 0.890353
Target:  5'- ---cCGGGCugaaaCUGGCGGcg-GUAGAGCg -3'
miRNA:   3'- guuuGUCCG-----GGCCGCCcuaCAUCUCG- -5'
29593 5' -55.8 NC_006151.1 + 27426 0.66 0.890353
Target:  5'- cCAGACccgguccauGGGCgCGGCGGacgcGGUGggucgGGGGCg -3'
miRNA:   3'- -GUUUG---------UCCGgGCCGCC----CUACa----UCUCG- -5'
29593 5' -55.8 NC_006151.1 + 3737 0.66 0.883449
Target:  5'- ---cCGGGCCggCGGCGGG----GGAGCu -3'
miRNA:   3'- guuuGUCCGG--GCCGCCCuacaUCUCG- -5'
29593 5' -55.8 NC_006151.1 + 17117 0.66 0.883449
Target:  5'- ----gGGGCuCCGGCGGcGGUGcugcgGGAGg -3'
miRNA:   3'- guuugUCCG-GGCCGCC-CUACa----UCUCg -5'
29593 5' -55.8 NC_006151.1 + 3553 0.67 0.876319
Target:  5'- gGAGCGGGCCCGaGUccGAg--GGAGCg -3'
miRNA:   3'- gUUUGUCCGGGC-CGccCUacaUCUCG- -5'
29593 5' -55.8 NC_006151.1 + 28666 0.67 0.876319
Target:  5'- -cGugGGGCaaaCGGCGGGAucUGauuGGGCc -3'
miRNA:   3'- guUugUCCGg--GCCGCCCU--ACau-CUCG- -5'
29593 5' -55.8 NC_006151.1 + 30676 0.67 0.876319
Target:  5'- ---cCGGGaagccuccCCCGGCGGGcgGgGGGGUg -3'
miRNA:   3'- guuuGUCC--------GGGCCGCCCuaCaUCUCG- -5'
29593 5' -55.8 NC_006151.1 + 90673 0.67 0.876319
Target:  5'- -cGGCGGGCCgcuugucccccgCGGCGGGGgcgGcGGAcGCg -3'
miRNA:   3'- guUUGUCCGG------------GCCGCCCUa--CaUCU-CG- -5'
29593 5' -55.8 NC_006151.1 + 106787 0.67 0.868967
Target:  5'- uGGACcuGGCCgCGGCGGcGGUGcucgucGGGGCc -3'
miRNA:   3'- gUUUGu-CCGG-GCCGCC-CUACa-----UCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.