miRNA display CGI


Results 1 - 20 of 480 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29594 3' -61.9 NC_006151.1 + 104987 0.66 0.667487
Target:  5'- gGCCUcgcucaacaucgaccGG-GCCGCcuCCGCggaggagcuggugACGCAGGCGg -3'
miRNA:   3'- -CGGA---------------CCgCGGCGu-GGCG-------------UGCGUCUGC- -5'
29594 3' -61.9 NC_006151.1 + 30800 0.66 0.664543
Target:  5'- aGCCgaUGGCcCCGgGg-GCACGCGGGCGg -3'
miRNA:   3'- -CGG--ACCGcGGCgUggCGUGCGUCUGC- -5'
29594 3' -61.9 NC_006151.1 + 56372 0.66 0.664543
Target:  5'- aGCUacGGCGCC-UGCUGCACGUcGGCGc -3'
miRNA:   3'- -CGGa-CCGCGGcGUGGCGUGCGuCUGC- -5'
29594 3' -61.9 NC_006151.1 + 131848 0.66 0.664543
Target:  5'- aGCggGGCgGCCGagaCGCGCGCcGGCGg -3'
miRNA:   3'- -CGgaCCG-CGGCgugGCGUGCGuCUGC- -5'
29594 3' -61.9 NC_006151.1 + 136818 0.66 0.664543
Target:  5'- gGCCgacGCGCCGCGCgggcucUGCgACGCGGcCGc -3'
miRNA:   3'- -CGGac-CGCGGCGUG------GCG-UGCGUCuGC- -5'
29594 3' -61.9 NC_006151.1 + 21971 0.66 0.664543
Target:  5'- gGCgUGGUGCgGCGCCGgcaGCGCccaaAGAUc -3'
miRNA:   3'- -CGgACCGCGgCGUGGCg--UGCG----UCUGc -5'
29594 3' -61.9 NC_006151.1 + 48966 0.66 0.664543
Target:  5'- cGCCUGgacGCGCCuCACgGCGCccgaGGACGu -3'
miRNA:   3'- -CGGAC---CGCGGcGUGgCGUGcg--UCUGC- -5'
29594 3' -61.9 NC_006151.1 + 76340 0.66 0.664543
Target:  5'- gGCCgGGUGCgGC-CCGuCGCGCGcGAUc -3'
miRNA:   3'- -CGGaCCGCGgCGuGGC-GUGCGU-CUGc -5'
29594 3' -61.9 NC_006151.1 + 115554 0.66 0.664543
Target:  5'- ---cGGCGUacuCGC-CCGCGgGCGGGCGc -3'
miRNA:   3'- cggaCCGCG---GCGuGGCGUgCGUCUGC- -5'
29594 3' -61.9 NC_006151.1 + 47254 0.66 0.663561
Target:  5'- uGgCUGGCGagauggaCCGCuCCgGCGCGCAG-CGu -3'
miRNA:   3'- -CgGACCGC-------GGCGuGG-CGUGCGUCuGC- -5'
29594 3' -61.9 NC_006151.1 + 117649 0.66 0.662579
Target:  5'- cGCCgcgcugcuccggGGCGUCcagGCACCGCgGCGC-GAUGa -3'
miRNA:   3'- -CGGa-----------CCGCGG---CGUGGCG-UGCGuCUGC- -5'
29594 3' -61.9 NC_006151.1 + 50056 0.66 0.661597
Target:  5'- aGCCUGcagauguuuauccuGUGCCGCagaGCC-CACGCGGcGCGc -3'
miRNA:   3'- -CGGAC--------------CGCGGCG---UGGcGUGCGUC-UGC- -5'
29594 3' -61.9 NC_006151.1 + 137047 0.66 0.654715
Target:  5'- uGCCccccGGCGCCgguGUACCGCguggagcugGCGCAccGGCGc -3'
miRNA:   3'- -CGGa---CCGCGG---CGUGGCG---------UGCGU--CUGC- -5'
29594 3' -61.9 NC_006151.1 + 4861 0.66 0.654715
Target:  5'- cCCcGGCGCC--GCCGUA-GCGGACGc -3'
miRNA:   3'- cGGaCCGCGGcgUGGCGUgCGUCUGC- -5'
29594 3' -61.9 NC_006151.1 + 30562 0.66 0.654715
Target:  5'- cGCCgcacGCGCCGUcCCGCGgcccCGuCGGGCGc -3'
miRNA:   3'- -CGGac--CGCGGCGuGGCGU----GC-GUCUGC- -5'
29594 3' -61.9 NC_006151.1 + 57202 0.66 0.654715
Target:  5'- cGCgaGGCGaaggcCCGCucgacgagGCCGU-CGCAGGCGg -3'
miRNA:   3'- -CGgaCCGC-----GGCG--------UGGCGuGCGUCUGC- -5'
29594 3' -61.9 NC_006151.1 + 90152 0.66 0.654715
Target:  5'- cGUCgGGC-CCGC-UgGCgACGCAGACGa -3'
miRNA:   3'- -CGGaCCGcGGCGuGgCG-UGCGUCUGC- -5'
29594 3' -61.9 NC_006151.1 + 136888 0.66 0.654715
Target:  5'- cGCCUcGCGCCcCACgGCugGguGcGCGc -3'
miRNA:   3'- -CGGAcCGCGGcGUGgCGugCguC-UGC- -5'
29594 3' -61.9 NC_006151.1 + 59670 0.66 0.654715
Target:  5'- cGCCUcGGgGaCGCGCgCGCACGCgccgAGcACGg -3'
miRNA:   3'- -CGGA-CCgCgGCGUG-GCGUGCG----UC-UGC- -5'
29594 3' -61.9 NC_006151.1 + 97470 0.66 0.654715
Target:  5'- gGCa-GGCGgCuCACCGcCACGUGGACGc -3'
miRNA:   3'- -CGgaCCGCgGcGUGGC-GUGCGUCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.