miRNA display CGI


Results 1 - 20 of 366 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29595 5' -66.7 NC_006151.1 + 105238 0.66 0.45431
Target:  5'- gGCUgaCGGCCgCCGagGuCGCCUgggaCGAGGCCUg -3'
miRNA:   3'- -CGG--GCCGG-GGCa-C-GCGGG----GUUCCGGG- -5'
29595 5' -66.7 NC_006151.1 + 48718 0.66 0.45431
Target:  5'- cGCCCGGCCCgCGaaggGCaCgCCCGcGGCg- -3'
miRNA:   3'- -CGGGCCGGG-GCa---CGcG-GGGUuCCGgg -5'
29595 5' -66.7 NC_006151.1 + 54269 0.66 0.45431
Target:  5'- gGCCagGGCaucuacaacUCgGUGCGCUCCAccgAGGCCg -3'
miRNA:   3'- -CGGg-CCG---------GGgCACGCGGGGU---UCCGGg -5'
29595 5' -66.7 NC_006151.1 + 129433 0.66 0.45431
Target:  5'- cGUCCGGCCCCaaGUGgGCggggCgCAcGGCCg -3'
miRNA:   3'- -CGGGCCGGGG--CACgCG----GgGUuCCGGg -5'
29595 5' -66.7 NC_006151.1 + 29234 0.66 0.45431
Target:  5'- cGCCgGGUCggccGCGCCCCGAGGgacagggaauccCCCg -3'
miRNA:   3'- -CGGgCCGGggcaCGCGGGGUUCC------------GGG- -5'
29595 5' -66.7 NC_006151.1 + 62517 0.66 0.45431
Target:  5'- gGCCCGGCgguaCCUGcagaaGCGCCUgCAcGGCCg -3'
miRNA:   3'- -CGGGCCG----GGGCa----CGCGGG-GUuCCGGg -5'
29595 5' -66.7 NC_006151.1 + 82137 0.66 0.45431
Target:  5'- gGCCCgcgggcGGgCCCG-GCgGCUCCA-GGUCCg -3'
miRNA:   3'- -CGGG------CCgGGGCaCG-CGGGGUuCCGGG- -5'
29595 5' -66.7 NC_006151.1 + 38680 0.66 0.453454
Target:  5'- aCCgggGGCCCCG-GCGCaagcgCCGcucccucggacucGGGCCCg -3'
miRNA:   3'- cGGg--CCGGGGCaCGCGg----GGU-------------UCCGGG- -5'
29595 5' -66.7 NC_006151.1 + 141887 0.66 0.453454
Target:  5'- gGCCgGGCaucgagcuccaccUCCacGCGCCCCGcGGCCg -3'
miRNA:   3'- -CGGgCCG-------------GGGcaCGCGGGGUuCCGGg -5'
29595 5' -66.7 NC_006151.1 + 68007 0.66 0.445789
Target:  5'- gGCCaCGGgCUCGgcgGCGUCC--AGGUCCa -3'
miRNA:   3'- -CGG-GCCgGGGCa--CGCGGGguUCCGGG- -5'
29595 5' -66.7 NC_006151.1 + 72627 0.66 0.445789
Target:  5'- gGUCCGGCgguCCCGcG-GUCCCGcGGCUCa -3'
miRNA:   3'- -CGGGCCG---GGGCaCgCGGGGUuCCGGG- -5'
29595 5' -66.7 NC_006151.1 + 31684 0.66 0.445789
Target:  5'- gGCCgGGCCgCCGagccgGcCGCgCCAuuGGGCgCCg -3'
miRNA:   3'- -CGGgCCGG-GGCa----C-GCGgGGU--UCCG-GG- -5'
29595 5' -66.7 NC_006151.1 + 42574 0.66 0.445789
Target:  5'- cUCCGGCgCCacGCGCCgCCcguccccgaGAGGCCUa -3'
miRNA:   3'- cGGGCCGgGGcaCGCGG-GG---------UUCCGGG- -5'
29595 5' -66.7 NC_006151.1 + 62249 0.66 0.445789
Target:  5'- uGUCCGGCUaCGUGCaggugcuCCCCAcgccGGCCUu -3'
miRNA:   3'- -CGGGCCGGgGCACGc------GGGGUu---CCGGG- -5'
29595 5' -66.7 NC_006151.1 + 78158 0.66 0.445789
Target:  5'- cGCCuCGGCCgCCGUG-GUC--GAGGCCg -3'
miRNA:   3'- -CGG-GCCGG-GGCACgCGGggUUCCGGg -5'
29595 5' -66.7 NC_006151.1 + 106630 0.66 0.445789
Target:  5'- cGCCgCGGUCaCCGaGCGCCUgGAcGCCg -3'
miRNA:   3'- -CGG-GCCGG-GGCaCGCGGGgUUcCGGg -5'
29595 5' -66.7 NC_006151.1 + 109997 0.66 0.445789
Target:  5'- aGCCCgccgaggaGGCgCCCGaGCuggacCCCUggGGCCUg -3'
miRNA:   3'- -CGGG--------CCG-GGGCaCGc----GGGGuuCCGGG- -5'
29595 5' -66.7 NC_006151.1 + 114667 0.66 0.443251
Target:  5'- cGCCCgugagcgccgcgaaGGCCUCGUgcucgaagggcGCGuCCCCGGGGgCg -3'
miRNA:   3'- -CGGG--------------CCGGGGCA-----------CGC-GGGGUUCCgGg -5'
29595 5' -66.7 NC_006151.1 + 98590 0.66 0.438198
Target:  5'- aGUUCGGCCCCGacgccauguuccgccUcgugagcgagugguGCGCCgCCuucgacGAGGCCCu -3'
miRNA:   3'- -CGGGCCGGGGC---------------A--------------CGCGG-GG------UUCCGGG- -5'
29595 5' -66.7 NC_006151.1 + 132645 0.66 0.437359
Target:  5'- cGCCCGGaCCUGgGcCGCCaCCucguccgcgGAGGCCg -3'
miRNA:   3'- -CGGGCCgGGGCaC-GCGG-GG---------UUCCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.