miRNA display CGI


Results 1 - 20 of 523 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29596 3' -58 NC_006151.1 + 104991 0.66 0.832872
Target:  5'- uCGCUcaacaucgaccgGGCCGCcuccgcggagGAGCuggugACGCAGgcGGCg -3'
miRNA:   3'- cGCGA------------CCGGUG----------CUCG-----UGCGUCuuCCG- -5'
29596 3' -58 NC_006151.1 + 21990 0.66 0.832872
Target:  5'- aGCGCccaaagaucuGCCugGGGU-CGCAGucGGCg -3'
miRNA:   3'- -CGCGac--------CGGugCUCGuGCGUCuuCCG- -5'
29596 3' -58 NC_006151.1 + 70961 0.66 0.832872
Target:  5'- uGCGCgUGGCCGucgaGGGCAacaGCAGccAGGa -3'
miRNA:   3'- -CGCG-ACCGGUg---CUCGUg--CGUCu-UCCg -5'
29596 3' -58 NC_006151.1 + 21775 0.66 0.832872
Target:  5'- gGUGCUGGuCCACGcGgGCGaac-GGGCa -3'
miRNA:   3'- -CGCGACC-GGUGCuCgUGCgucuUCCG- -5'
29596 3' -58 NC_006151.1 + 48138 0.66 0.832872
Target:  5'- gGCGCUGGggguuCCugGcaccGGCGuCGCGGGaaacccccauGGGCu -3'
miRNA:   3'- -CGCGACC-----GGugC----UCGU-GCGUCU----------UCCG- -5'
29596 3' -58 NC_006151.1 + 63406 0.66 0.832872
Target:  5'- aGCaGCacGGgCACGGcGCAgGCGGgcGGCa -3'
miRNA:   3'- -CG-CGa-CCgGUGCU-CGUgCGUCuuCCG- -5'
29596 3' -58 NC_006151.1 + 75341 0.66 0.832872
Target:  5'- cGUGCUcgaaGGUCACGuggcagGGCACGCcguccuuguugaAGAAGuGCa -3'
miRNA:   3'- -CGCGA----CCGGUGC------UCGUGCG------------UCUUC-CG- -5'
29596 3' -58 NC_006151.1 + 5642 0.66 0.832872
Target:  5'- gGCGCcgagaccGGCC-CG-GCgGCGgGGGAGGCu -3'
miRNA:   3'- -CGCGa------CCGGuGCuCG-UGCgUCUUCCG- -5'
29596 3' -58 NC_006151.1 + 11755 0.66 0.832872
Target:  5'- gGUGCgGGCgAgUGAGCguGCGCgaaggggggAGAGGGCg -3'
miRNA:   3'- -CGCGaCCGgU-GCUCG--UGCG---------UCUUCCG- -5'
29596 3' -58 NC_006151.1 + 33124 0.66 0.832872
Target:  5'- gGCGCgugccgcgGGCCgagugucggGCGAGUGCgagGCGGGucggGGGCg -3'
miRNA:   3'- -CGCGa-------CCGG---------UGCUCGUG---CGUCU----UCCG- -5'
29596 3' -58 NC_006151.1 + 57807 0.66 0.832872
Target:  5'- cGCGaagucaaacUUGGCCAgcCaGGCccCGCGGAGGGCg -3'
miRNA:   3'- -CGC---------GACCGGU--GcUCGu-GCGUCUUCCG- -5'
29596 3' -58 NC_006151.1 + 2427 0.66 0.832045
Target:  5'- -gGC-GGCCgcaggagacgaagACGGGC-CGCAGcGGGGCg -3'
miRNA:   3'- cgCGaCCGG-------------UGCUCGuGCGUC-UUCCG- -5'
29596 3' -58 NC_006151.1 + 2929 0.66 0.830386
Target:  5'- cGCGCcGaGCCGCGAGCagagguacuccacgGCGCc---GGCg -3'
miRNA:   3'- -CGCGaC-CGGUGCUCG--------------UGCGucuuCCG- -5'
29596 3' -58 NC_006151.1 + 71673 0.66 0.827884
Target:  5'- cGCGCgccacgGGCCGCGuGCcgaGCGUgucgcccagccgcgaGGccGAGGCg -3'
miRNA:   3'- -CGCGa-----CCGGUGCuCG---UGCG---------------UC--UUCCG- -5'
29596 3' -58 NC_006151.1 + 111993 0.66 0.824524
Target:  5'- gGUGC-GGCUACGAcGUcgACGCGGc-GGCg -3'
miRNA:   3'- -CGCGaCCGGUGCU-CG--UGCGUCuuCCG- -5'
29596 3' -58 NC_006151.1 + 96635 0.66 0.824524
Target:  5'- cGCGCaGcGCCuCGAGCucgGCGgcGAGGGCc -3'
miRNA:   3'- -CGCGaC-CGGuGCUCGug-CGU--CUUCCG- -5'
29596 3' -58 NC_006151.1 + 75625 0.66 0.824524
Target:  5'- cGCGCcGaGcCCACGGGCuugccguCGUcGggGGCc -3'
miRNA:   3'- -CGCGaC-C-GGUGCUCGu------GCGuCuuCCG- -5'
29596 3' -58 NC_006151.1 + 68542 0.66 0.824524
Target:  5'- cGCGCaGGucCCGCGAcacGCcgACGCAG-AGGUa -3'
miRNA:   3'- -CGCGaCC--GGUGCU---CG--UGCGUCuUCCG- -5'
29596 3' -58 NC_006151.1 + 63703 0.66 0.824524
Target:  5'- uGCGCguucgcGGCgACGuGGCGCccGUcGAAGGCg -3'
miRNA:   3'- -CGCGa-----CCGgUGC-UCGUG--CGuCUUCCG- -5'
29596 3' -58 NC_006151.1 + 27290 0.66 0.824524
Target:  5'- aGCGCccGcGCUugGGGgGCGUGGGggucgAGGCg -3'
miRNA:   3'- -CGCGa-C-CGGugCUCgUGCGUCU-----UCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.