miRNA display CGI


Results 1 - 20 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29596 5' -57.2 NC_006151.1 + 137180 0.66 0.859096
Target:  5'- cGGCGCagaUGUACGUgAGCCGc-CACGAg -3'
miRNA:   3'- cUCGUGg--ACGUGCA-UCGGCcuGUGCU- -5'
29596 5' -57.2 NC_006151.1 + 63172 0.66 0.859096
Target:  5'- cGGgGCCUuggggcGCACGgGGCCGGGCucgcCGAc -3'
miRNA:   3'- cUCgUGGA------CGUGCaUCGGCCUGu---GCU- -5'
29596 5' -57.2 NC_006151.1 + 67046 0.66 0.859096
Target:  5'- cGAGCgcgccaccgccuACCUGCugGcGGCCuucGACACGc -3'
miRNA:   3'- -CUCG------------UGGACGugCaUCGGc--CUGUGCu -5'
29596 5' -57.2 NC_006151.1 + 77586 0.66 0.859096
Target:  5'- gGGGCugCUGCugccgcugACGgAGCUGGACcucuGCGGc -3'
miRNA:   3'- -CUCGugGACG--------UGCaUCGGCCUG----UGCU- -5'
29596 5' -57.2 NC_006151.1 + 121893 0.66 0.859096
Target:  5'- -uGCGCCUGgcgcuCGCGUAcGCgCGGGC-CGAg -3'
miRNA:   3'- cuCGUGGAC-----GUGCAU-CG-GCCUGuGCU- -5'
29596 5' -57.2 NC_006151.1 + 128516 0.66 0.859096
Target:  5'- cGAGCACCUcGCcCG-AGCCcgaGGcCACGGc -3'
miRNA:   3'- -CUCGUGGA-CGuGCaUCGG---CCuGUGCU- -5'
29596 5' -57.2 NC_006151.1 + 136884 0.66 0.859096
Target:  5'- gGAGCGCCUcGCGCcccacGGCUGGguGCGCGc -3'
miRNA:   3'- -CUCGUGGA-CGUGca---UCGGCC--UGUGCu -5'
29596 5' -57.2 NC_006151.1 + 78076 0.66 0.854451
Target:  5'- gGAGCcugucCCUGCAgaugcucugcgaccuCGUGGCCGGG-GCGGa -3'
miRNA:   3'- -CUCGu----GGACGU---------------GCAUCGGCCUgUGCU- -5'
29596 5' -57.2 NC_006151.1 + 99531 0.66 0.852101
Target:  5'- uGGCGCCgcgcccgcccacggaGCACGUGGgCGcGGCGCGc -3'
miRNA:   3'- cUCGUGGa--------------CGUGCAUCgGC-CUGUGCu -5'
29596 5' -57.2 NC_006151.1 + 103711 0.66 0.851314
Target:  5'- gGAGCACCcggaGCugGgcuuccuggAGCCGcuGGCGCGGc -3'
miRNA:   3'- -CUCGUGGa---CGugCa--------UCGGC--CUGUGCU- -5'
29596 5' -57.2 NC_006151.1 + 4215 0.66 0.851314
Target:  5'- aGGGCgGCCgggGCGCG-GG-CGGGCGCGGg -3'
miRNA:   3'- -CUCG-UGGa--CGUGCaUCgGCCUGUGCU- -5'
29596 5' -57.2 NC_006151.1 + 4660 0.66 0.851314
Target:  5'- cGGGgGCCUGCAuccgcggguucUGcAGCCaGGACAUGGc -3'
miRNA:   3'- -CUCgUGGACGU-----------GCaUCGG-CCUGUGCU- -5'
29596 5' -57.2 NC_006151.1 + 26976 0.66 0.851314
Target:  5'- cAGCGCgCUGCGC--AGCgGGGCGCu- -3'
miRNA:   3'- cUCGUG-GACGUGcaUCGgCCUGUGcu -5'
29596 5' -57.2 NC_006151.1 + 28576 0.66 0.851314
Target:  5'- gGAGCccgcauugGCCgGCGCGUccCCGGAgGCGGg -3'
miRNA:   3'- -CUCG--------UGGaCGUGCAucGGCCUgUGCU- -5'
29596 5' -57.2 NC_006151.1 + 54354 0.66 0.851314
Target:  5'- cGGCGCgCUacgaGgACGUGGCCcgGGACugGAu -3'
miRNA:   3'- cUCGUG-GA----CgUGCAUCGG--CCUGugCU- -5'
29596 5' -57.2 NC_006151.1 + 5236 0.66 0.851314
Target:  5'- cGAGCGCC-GCGCGgcggcggcgggGGCCcgGGGgGCGGa -3'
miRNA:   3'- -CUCGUGGaCGUGCa----------UCGG--CCUgUGCU- -5'
29596 5' -57.2 NC_006151.1 + 86731 0.66 0.851314
Target:  5'- -cGCGCC-GcCGCGaGGCCGGcguGCGCGGa -3'
miRNA:   3'- cuCGUGGaC-GUGCaUCGGCC---UGUGCU- -5'
29596 5' -57.2 NC_006151.1 + 54916 0.66 0.850524
Target:  5'- cAGCGCgUGCACGgcgagguGCUGGcgugccacgcgcuGCGCGAg -3'
miRNA:   3'- cUCGUGgACGUGCau-----CGGCC-------------UGUGCU- -5'
29596 5' -57.2 NC_006151.1 + 64918 0.66 0.848145
Target:  5'- cGAGCACCUccacggcguacucGCGCGUcAGCgccuggccgcgcugCGGGCGCa- -3'
miRNA:   3'- -CUCGUGGA-------------CGUGCA-UCG--------------GCCUGUGcu -5'
29596 5' -57.2 NC_006151.1 + 98419 0.66 0.845747
Target:  5'- cGGGCACCUGCGaggcggcCGUgcucgccgagaaccuGGCCGGcCugGc -3'
miRNA:   3'- -CUCGUGGACGU-------GCA---------------UCGGCCuGugCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.