miRNA display CGI


Results 1 - 20 of 216 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29597 3' -65.7 NC_006151.1 + 137398 0.66 0.475456
Target:  5'- aGCGCcugcccGCCGGGGgGcGCCcucgCCGCCGcCg -3'
miRNA:   3'- -UGUGc-----CGGUCCCgC-CGGa---GGCGGCaG- -5'
29597 3' -65.7 NC_006151.1 + 19405 0.66 0.475456
Target:  5'- -gACGGUCAGGuGCGGCgaCCaCCGcUCc -3'
miRNA:   3'- ugUGCCGGUCC-CGCCGgaGGcGGC-AG- -5'
29597 3' -65.7 NC_006151.1 + 40066 0.66 0.475456
Target:  5'- cAC-CGGCCcGcGGgGGCCUCgggCGCCGg- -3'
miRNA:   3'- -UGuGCCGGuC-CCgCCGGAG---GCGGCag -5'
29597 3' -65.7 NC_006151.1 + 111859 0.66 0.475456
Target:  5'- -gGCGcUCGGGGUcgcaGGCCgUCuCGCCGUCg -3'
miRNA:   3'- ugUGCcGGUCCCG----CCGG-AG-GCGGCAG- -5'
29597 3' -65.7 NC_006151.1 + 15898 0.66 0.475456
Target:  5'- gACGCGcGCCccgacGCGGCCcgCCGCCGcCc -3'
miRNA:   3'- -UGUGC-CGGucc--CGCCGGa-GGCGGCaG- -5'
29597 3' -65.7 NC_006151.1 + 39791 0.66 0.475456
Target:  5'- cGCGCGGCCaaccgcugGGGGCucggcGCC-CCGCUG-Cg -3'
miRNA:   3'- -UGUGCCGG--------UCCCGc----CGGaGGCGGCaG- -5'
29597 3' -65.7 NC_006151.1 + 79121 0.66 0.475456
Target:  5'- gGCugGGCCAcGGCcGCCccaucgUCGCCGgUCg -3'
miRNA:   3'- -UGugCCGGUcCCGcCGGa-----GGCGGC-AG- -5'
29597 3' -65.7 NC_006151.1 + 105884 0.66 0.475456
Target:  5'- cGCGCGGUCGGcgacaagcuGGCGGCCa-UGCUGUg -3'
miRNA:   3'- -UGUGCCGGUC---------CCGCCGGagGCGGCAg -5'
29597 3' -65.7 NC_006151.1 + 129851 0.66 0.470128
Target:  5'- gACACGGCCuGGcccaGGCCcguggcgucgcgcgCCGCCGcCa -3'
miRNA:   3'- -UGUGCCGGuCCcg--CCGGa-------------GGCGGCaG- -5'
29597 3' -65.7 NC_006151.1 + 20379 0.66 0.466593
Target:  5'- uCGCGuCCAGGGUcccgggcaccggGGUCaUCGCCGUCg -3'
miRNA:   3'- uGUGCcGGUCCCG------------CCGGaGGCGGCAG- -5'
29597 3' -65.7 NC_006151.1 + 77512 0.66 0.466593
Target:  5'- cGCACGGagcuGGCGcGCCUCgGCCG-Cg -3'
miRNA:   3'- -UGUGCCggucCCGC-CGGAGgCGGCaG- -5'
29597 3' -65.7 NC_006151.1 + 111044 0.66 0.466593
Target:  5'- cCACGGgCAGGGCGcCCUCgaG-CGUCu -3'
miRNA:   3'- uGUGCCgGUCCCGCcGGAGg-CgGCAG- -5'
29597 3' -65.7 NC_006151.1 + 116855 0.66 0.466593
Target:  5'- -gGCGGCgGGGaaGGCCg-CGUCGUCg -3'
miRNA:   3'- ugUGCCGgUCCcgCCGGagGCGGCAG- -5'
29597 3' -65.7 NC_006151.1 + 38115 0.66 0.466593
Target:  5'- gACGCGauccCCGGGGcCGGCC-CgGCCGa- -3'
miRNA:   3'- -UGUGCc---GGUCCC-GCCGGaGgCGGCag -5'
29597 3' -65.7 NC_006151.1 + 59002 0.66 0.466593
Target:  5'- aGCGCGGCgucCAGcGGCGcGUCgaagCCGCCcuggGUCa -3'
miRNA:   3'- -UGUGCCG---GUC-CCGC-CGGa---GGCGG----CAG- -5'
29597 3' -65.7 NC_006151.1 + 104266 0.66 0.466593
Target:  5'- aACGcCGGCgCGGcGGCGGgC-CCGCCGc- -3'
miRNA:   3'- -UGU-GCCG-GUC-CCGCCgGaGGCGGCag -5'
29597 3' -65.7 NC_006151.1 + 133160 0.66 0.466593
Target:  5'- -gGCGGCgCGGGcGUgGGCCUCgGCCa-- -3'
miRNA:   3'- ugUGCCG-GUCC-CG-CCGGAGgCGGcag -5'
29597 3' -65.7 NC_006151.1 + 135030 0.66 0.466593
Target:  5'- aGCGgGGCCgcgucguccucGGGGCGGucccCCUCC-UCGUCu -3'
miRNA:   3'- -UGUgCCGG-----------UCCCGCC----GGAGGcGGCAG- -5'
29597 3' -65.7 NC_006151.1 + 128400 0.66 0.461316
Target:  5'- -gGCGGCCAcgacGGCGGCCgugaggccgcacaCGCCGcUCu -3'
miRNA:   3'- ugUGCCGGUc---CCGCCGGag-----------GCGGC-AG- -5'
29597 3' -65.7 NC_006151.1 + 134800 0.66 0.457816
Target:  5'- ---aGGCCGcGGCGGCC-CgCGCCGg- -3'
miRNA:   3'- ugugCCGGUcCCGCCGGaG-GCGGCag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.