miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29598 3' -59.3 NC_006151.1 + 64212 0.67 0.746934
Target:  5'- aGGuccGGCGUgggCGCCUCG-GCGUacaggGcCGCg -3'
miRNA:   3'- gCC---CCGCAa--GCGGAGCuCGCA-----CaGCG- -5'
29598 3' -59.3 NC_006151.1 + 136650 0.67 0.746934
Target:  5'- uGGGGCGcUCGCCccUCGgggAGCGcgcgGcCGCc -3'
miRNA:   3'- gCCCCGCaAGCGG--AGC---UCGCa---CaGCG- -5'
29598 3' -59.3 NC_006151.1 + 8326 0.67 0.741297
Target:  5'- cCGGGGCGcgCggGCCUCGAucgcgcccgccggacGCGgaggCGCg -3'
miRNA:   3'- -GCCCCGCaaG--CGGAGCU---------------CGCaca-GCG- -5'
29598 3' -59.3 NC_006151.1 + 11753 0.67 0.72802
Target:  5'- gGGGuGCGggCGag-UGAGCGUG-CGCg -3'
miRNA:   3'- gCCC-CGCaaGCggaGCUCGCACaGCG- -5'
29598 3' -59.3 NC_006151.1 + 90136 0.67 0.718442
Target:  5'- gCGGGGCGguagugCGCgUCGGGCccgcUGgcgaCGCa -3'
miRNA:   3'- -GCCCCGCaa----GCGgAGCUCGc---ACa---GCG- -5'
29598 3' -59.3 NC_006151.1 + 61980 0.68 0.699087
Target:  5'- uGGGGCGUgccaCGCCUgcaagggcaCGGGUgacGUG-CGCg -3'
miRNA:   3'- gCCCCGCAa---GCGGA---------GCUCG---CACaGCG- -5'
29598 3' -59.3 NC_006151.1 + 133387 0.68 0.699087
Target:  5'- cCGGGGCGgcgGCCggggcCGAGCGggcgGUCu- -3'
miRNA:   3'- -GCCCCGCaagCGGa----GCUCGCa---CAGcg -5'
29598 3' -59.3 NC_006151.1 + 97265 0.68 0.693236
Target:  5'- gGGGGCccacacgggcagCGCCUCGgcggcgGGCGUGUUGa -3'
miRNA:   3'- gCCCCGcaa---------GCGGAGC------UCGCACAGCg -5'
29598 3' -59.3 NC_006151.1 + 3679 0.68 0.689326
Target:  5'- cCGGGGCGgcggGCCcCGGGCGcGcggCGCu -3'
miRNA:   3'- -GCCCCGCaag-CGGaGCUCGCaCa--GCG- -5'
29598 3' -59.3 NC_006151.1 + 8492 0.68 0.689326
Target:  5'- aCGGGGCGggCGgg--GAGgGUGUCGUc -3'
miRNA:   3'- -GCCCCGCaaGCggagCUCgCACAGCG- -5'
29598 3' -59.3 NC_006151.1 + 78112 0.68 0.689326
Target:  5'- cCGGGGCGgaCGCCaUCcuGCGgcggGcCGCg -3'
miRNA:   3'- -GCCCCGCaaGCGG-AGcuCGCa---CaGCG- -5'
29598 3' -59.3 NC_006151.1 + 27350 0.68 0.689326
Target:  5'- cCGGGGuCGUggGCCggggccCGGGCGgGUCGa -3'
miRNA:   3'- -GCCCC-GCAagCGGa-----GCUCGCaCAGCg -5'
29598 3' -59.3 NC_006151.1 + 84657 0.68 0.67952
Target:  5'- cCGcGGGCGcgCGCCUCGAGgccgagGUGgacgaGCa -3'
miRNA:   3'- -GC-CCCGCaaGCGGAGCUCg-----CACag---CG- -5'
29598 3' -59.3 NC_006151.1 + 131735 0.68 0.67952
Target:  5'- gCGGGGUGgcggGCC-CGGGCGaggcgaccGUCGCg -3'
miRNA:   3'- -GCCCCGCaag-CGGaGCUCGCa-------CAGCG- -5'
29598 3' -59.3 NC_006151.1 + 61287 0.68 0.669678
Target:  5'- gCGGGGaCGgaaGCUcgaCGGGCGcGUCGCg -3'
miRNA:   3'- -GCCCC-GCaagCGGa--GCUCGCaCAGCG- -5'
29598 3' -59.3 NC_006151.1 + 96203 0.68 0.669678
Target:  5'- uGGGGCGccgcgUCGCCguggCG-GCG-GcCGCg -3'
miRNA:   3'- gCCCCGCa----AGCGGa---GCuCGCaCaGCG- -5'
29598 3' -59.3 NC_006151.1 + 28095 0.68 0.669678
Target:  5'- -cGGGCGU---CCUCGAGCGgggCGCg -3'
miRNA:   3'- gcCCCGCAagcGGAGCUCGCacaGCG- -5'
29598 3' -59.3 NC_006151.1 + 127412 0.68 0.659808
Target:  5'- aCGGGagcccGCGgggUCGCCUCGGcgcuCGUG-CGCg -3'
miRNA:   3'- -GCCC-----CGCa--AGCGGAGCUc---GCACaGCG- -5'
29598 3' -59.3 NC_006151.1 + 115566 0.68 0.659808
Target:  5'- cCGcGGGCGggCGCg-CGGGCaG-GUCGCg -3'
miRNA:   3'- -GC-CCCGCaaGCGgaGCUCG-CaCAGCG- -5'
29598 3' -59.3 NC_006151.1 + 135090 0.68 0.659808
Target:  5'- gGGGGCGgcgggGCCgggCGGGCGgcgGUagCGCg -3'
miRNA:   3'- gCCCCGCaag--CGGa--GCUCGCa--CA--GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.