miRNA display CGI


Results 21 - 40 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29598 5' -55.4 NC_006151.1 + 77231 0.67 0.865015
Target:  5'- uGUGCgc--CGGgagGCGcCC-CCCGGCg -3'
miRNA:   3'- -UACGauauGCCaa-CGCuGGaGGGCCG- -5'
29598 5' -55.4 NC_006151.1 + 78449 0.67 0.857286
Target:  5'- cGUGCUGcGCGag-GCGACCgUCUuCGGCg -3'
miRNA:   3'- -UACGAUaUGCcaaCGCUGG-AGG-GCCG- -5'
29598 5' -55.4 NC_006151.1 + 39156 0.67 0.857286
Target:  5'- -cGCgccGCG---GCGGCCUCUCGGCg -3'
miRNA:   3'- uaCGauaUGCcaaCGCUGGAGGGCCG- -5'
29598 5' -55.4 NC_006151.1 + 107027 0.67 0.849349
Target:  5'- -cGCUGaucGCGGc-GCGGCC-CCUGGCc -3'
miRNA:   3'- uaCGAUa--UGCCaaCGCUGGaGGGCCG- -5'
29598 5' -55.4 NC_006151.1 + 54112 0.68 0.833717
Target:  5'- -gGCUGcgACGGcgGCGGCUgcggacgggcucugcCCCGGCg -3'
miRNA:   3'- uaCGAUa-UGCCaaCGCUGGa--------------GGGCCG- -5'
29598 5' -55.4 NC_006151.1 + 113515 0.68 0.832875
Target:  5'- -gGCUucgugGCGGacGCGcGCUUCCUGGCg -3'
miRNA:   3'- uaCGAua---UGCCaaCGC-UGGAGGGCCG- -5'
29598 5' -55.4 NC_006151.1 + 25216 0.68 0.824352
Target:  5'- -gGcCUcgGCGGagccGCGACCUCuuGGUg -3'
miRNA:   3'- uaC-GAuaUGCCaa--CGCUGGAGggCCG- -5'
29598 5' -55.4 NC_006151.1 + 36519 0.68 0.824352
Target:  5'- -gGCcg-GCGGc-GCGGCCUcggacCCCGGCg -3'
miRNA:   3'- uaCGauaUGCCaaCGCUGGA-----GGGCCG- -5'
29598 5' -55.4 NC_006151.1 + 139188 0.68 0.824352
Target:  5'- uGUGCUG-GCGGUcgggGCgcugGAgCUCCUGGCg -3'
miRNA:   3'- -UACGAUaUGCCAa---CG----CUgGAGGGCCG- -5'
29598 5' -55.4 NC_006151.1 + 75395 0.68 0.819152
Target:  5'- -cGCgggGCGGgUGCGugCgcggguccgggaggCCCGGCg -3'
miRNA:   3'- uaCGauaUGCCaACGCugGa-------------GGGCCG- -5'
29598 5' -55.4 NC_006151.1 + 125162 0.68 0.810347
Target:  5'- -aGCUGUACGcgcGCGagcucgagcgccucgGCCUCgCCGGCg -3'
miRNA:   3'- uaCGAUAUGCcaaCGC---------------UGGAG-GGCCG- -5'
29598 5' -55.4 NC_006151.1 + 24231 0.68 0.797742
Target:  5'- cUGCgUGUACGGcugGCGGugggUCCCGGCg -3'
miRNA:   3'- uACG-AUAUGCCaa-CGCUgg--AGGGCCG- -5'
29598 5' -55.4 NC_006151.1 + 128065 0.69 0.792246
Target:  5'- -gGCUGcGCGGggGCGACCgacaggaagcgcaugUCCCgcuGGCc -3'
miRNA:   3'- uaCGAUaUGCCaaCGCUGG---------------AGGG---CCG- -5'
29598 5' -55.4 NC_006151.1 + 63319 0.69 0.779218
Target:  5'- -cGCgacGCGGUgacGCGaaagGCCUCCuCGGCg -3'
miRNA:   3'- uaCGauaUGCCAa--CGC----UGGAGG-GCCG- -5'
29598 5' -55.4 NC_006151.1 + 5909 0.69 0.779218
Target:  5'- aGUGCUGccGgGGUcgGCGGCCggggCCCGGa -3'
miRNA:   3'- -UACGAUa-UgCCAa-CGCUGGa---GGGCCg -5'
29598 5' -55.4 NC_006151.1 + 6102 0.69 0.777335
Target:  5'- cUGCUGggccgaaggaggACGGg-GCGGCCUCgUGGCu -3'
miRNA:   3'- uACGAUa-----------UGCCaaCGCUGGAGgGCCG- -5'
29598 5' -55.4 NC_006151.1 + 57150 0.69 0.750442
Target:  5'- -cGCg--GCGGggGCGAgggcguCC-CCCGGCg -3'
miRNA:   3'- uaCGauaUGCCaaCGCU------GGaGGGCCG- -5'
29598 5' -55.4 NC_006151.1 + 82202 0.69 0.750442
Target:  5'- -cGCUcgGCGGagaUGaUGACCUCCagCGGCa -3'
miRNA:   3'- uaCGAuaUGCCa--AC-GCUGGAGG--GCCG- -5'
29598 5' -55.4 NC_006151.1 + 65813 0.7 0.738648
Target:  5'- cGUGCc--GCGGUggauggGCGGCCgcgccagcgcggCCCGGCu -3'
miRNA:   3'- -UACGauaUGCCAa-----CGCUGGa-----------GGGCCG- -5'
29598 5' -55.4 NC_006151.1 + 107087 0.7 0.730708
Target:  5'- -aGCUG-GCGGUgucgcGCGugCUCUgGGCg -3'
miRNA:   3'- uaCGAUaUGCCAa----CGCugGAGGgCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.