miRNA display CGI


Results 61 - 80 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29599 3' -51.2 NC_006151.1 + 20158 0.67 0.980485
Target:  5'- cGCGUGGAccgcCGGGCcgcGCCcgGGUC-GCGGCc -3'
miRNA:   3'- -CGCACCU----GCUCG---UGGa-CUAGuUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 48403 0.67 0.975399
Target:  5'- cUGUGGGCGucgGGCaccgccuACCUGGUCAACc-- -3'
miRNA:   3'- cGCACCUGC---UCG-------UGGACUAGUUGuug -5'
29599 3' -51.2 NC_006151.1 + 85776 0.67 0.978171
Target:  5'- gGCGcUGGACGcGCACUcGAUCcGCGcgcGCg -3'
miRNA:   3'- -CGC-ACCUGCuCGUGGaCUAGuUGU---UG- -5'
29599 3' -51.2 NC_006151.1 + 30836 0.67 0.978171
Target:  5'- uGCGUGGGCGgagaggAGCGaggaggaCUGG-CGGCGGCg -3'
miRNA:   3'- -CGCACCUGC------UCGUg------GACUaGUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 120349 0.67 0.975661
Target:  5'- cGCGUGGccgggcucGCGGGCGCCUac-CAGCGc- -3'
miRNA:   3'- -CGCACC--------UGCUCGUGGAcuaGUUGUug -5'
29599 3' -51.2 NC_006151.1 + 20102 0.67 0.975661
Target:  5'- gGCugggGGACGGGCGCCc---CGGCGACg -3'
miRNA:   3'- -CGca--CCUGCUCGUGGacuaGUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 99913 0.67 0.975399
Target:  5'- aCGUGGGCGcgcgacuacGGCGCCgGccucauccccaacGUCAGCGGCu -3'
miRNA:   3'- cGCACCUGC---------UCGUGGaC-------------UAGUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 124937 0.67 0.978171
Target:  5'- cGCG-GGcccUGGGCGCCUccuucGUCAGCGACg -3'
miRNA:   3'- -CGCaCCu--GCUCGUGGAc----UAGUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 104578 0.67 0.972946
Target:  5'- cGCGcGGACGuGCugCaGGcCGGCGGCa -3'
miRNA:   3'- -CGCaCCUGCuCGugGaCUaGUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 100243 0.67 0.972946
Target:  5'- cGCGUGGuggcgcuCGAGCGCCUcuUCAccuGCcGCu -3'
miRNA:   3'- -CGCACCu------GCUCGUGGAcuAGU---UGuUG- -5'
29599 3' -51.2 NC_006151.1 + 66620 0.67 0.972946
Target:  5'- aCGacGGCGAGCGCCUGGccuUCcaccGCAACg -3'
miRNA:   3'- cGCacCUGCUCGUGGACU---AGu---UGUUG- -5'
29599 3' -51.2 NC_006151.1 + 33963 0.67 0.972946
Target:  5'- gGCG-GGACGcGGCGCCcGcgCGGgGACa -3'
miRNA:   3'- -CGCaCCUGC-UCGUGGaCuaGUUgUUG- -5'
29599 3' -51.2 NC_006151.1 + 27229 0.67 0.972946
Target:  5'- cCGUGGACGcGCACCUccucggGGUCgGGCGGg -3'
miRNA:   3'- cGCACCUGCuCGUGGA------CUAG-UUGUUg -5'
29599 3' -51.2 NC_006151.1 + 5854 0.67 0.982611
Target:  5'- uGCGgagggGGACGAGCGCCcgGGgccgcCGGgGGCc -3'
miRNA:   3'- -CGCa----CCUGCUCGUGGa-CUa----GUUgUUG- -5'
29599 3' -51.2 NC_006151.1 + 139566 0.66 0.990733
Target:  5'- gGCGcccGGuccGCGAGCGCCUGGgcUCGcgcccccccgaGCGGCg -3'
miRNA:   3'- -CGCa--CC---UGCUCGUGGACU--AGU-----------UGUUG- -5'
29599 3' -51.2 NC_006151.1 + 78677 0.66 0.988552
Target:  5'- gGUGcUGGACGGGCucuacgccggccgggGCCUcGUCGccGCGACg -3'
miRNA:   3'- -CGC-ACCUGCUCG---------------UGGAcUAGU--UGUUG- -5'
29599 3' -51.2 NC_006151.1 + 125259 0.66 0.987949
Target:  5'- gGCGgGGAcgccCGAGcCGCCggccGUCAACGGCa -3'
miRNA:   3'- -CGCaCCU----GCUC-GUGGac--UAGUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 114320 0.66 0.987949
Target:  5'- uGCGc-GACGGGgGCCUGcgCGACGugcGCg -3'
miRNA:   3'- -CGCacCUGCUCgUGGACuaGUUGU---UG- -5'
29599 3' -51.2 NC_006151.1 + 68047 0.66 0.984557
Target:  5'- gGCGcGG-CGGGCACggGcUCGGCGACg -3'
miRNA:   3'- -CGCaCCuGCUCGUGgaCuAGUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 64966 0.66 0.984557
Target:  5'- gGCGcaGGcCGAGCGCCacGUCcAGCAGCa -3'
miRNA:   3'- -CGCa-CCuGCUCGUGGacUAG-UUGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.