miRNA display CGI


Results 41 - 60 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29599 3' -51.2 NC_006151.1 + 55935 0.69 0.951956
Target:  5'- cGUGaUGGACGAGCugACCUGG-CAcgcccucccGCGGCu -3'
miRNA:   3'- -CGC-ACCUGCUCG--UGGACUaGU---------UGUUG- -5'
29599 3' -51.2 NC_006151.1 + 124391 0.69 0.951956
Target:  5'- uGCGUcuccaaGGcCGAGUACgUGcgCAACAACc -3'
miRNA:   3'- -CGCA------CCuGCUCGUGgACuaGUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 139194 0.68 0.959889
Target:  5'- gGCGgucgGGGCgcugGAGCuCCUGG-CGGCGACg -3'
miRNA:   3'- -CGCa---CCUG----CUCGuGGACUaGUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 85645 0.68 0.959889
Target:  5'- aGCGgGGACGcGCccGCCUcGcgCAGCGGCg -3'
miRNA:   3'- -CGCaCCUGCuCG--UGGA-CuaGUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 69926 0.68 0.963496
Target:  5'- -aGUGGGCgccGAGCGCCagGggCAGCGAg -3'
miRNA:   3'- cgCACCUG---CUCGUGGa-CuaGUUGUUg -5'
29599 3' -51.2 NC_006151.1 + 131650 0.68 0.963496
Target:  5'- -gGUGGuCGGGCGCCgcaGAUcCGACcGCg -3'
miRNA:   3'- cgCACCuGCUCGUGGa--CUA-GUUGuUG- -5'
29599 3' -51.2 NC_006151.1 + 129468 0.68 0.966543
Target:  5'- gGCG-GGACGAGCccguCCaGGUCcucggagGGCAGCg -3'
miRNA:   3'- -CGCaCCUGCUCGu---GGaCUAG-------UUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 101934 0.68 0.966543
Target:  5'- cCGUGGccgGCGAGCcaggaggACCUGAgCAGCAcGCa -3'
miRNA:   3'- cGCACC---UGCUCG-------UGGACUaGUUGU-UG- -5'
29599 3' -51.2 NC_006151.1 + 2296 0.68 0.96687
Target:  5'- cGCGgcgGcGACG-GCGCCcggGGUCAGCAccaGCg -3'
miRNA:   3'- -CGCa--C-CUGCuCGUGGa--CUAGUUGU---UG- -5'
29599 3' -51.2 NC_006151.1 + 128220 0.68 0.96687
Target:  5'- gGCGUGcGACGAGCucgugggcGCCaGGUCGcCGAUc -3'
miRNA:   3'- -CGCAC-CUGCUCG--------UGGaCUAGUuGUUG- -5'
29599 3' -51.2 NC_006151.1 + 103063 0.68 0.96687
Target:  5'- gGCGcaGGcgcACGGGCACCUGG--AGCGGCg -3'
miRNA:   3'- -CGCa-CC---UGCUCGUGGACUagUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 119463 0.68 0.96687
Target:  5'- aCGUGGACGccguGCGCUacgUGGcCGGCAGCc -3'
miRNA:   3'- cGCACCUGCu---CGUGG---ACUaGUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 97488 0.68 0.970018
Target:  5'- aCGUGGACGcgcAGCGCCUcg-CGGCggUg -3'
miRNA:   3'- cGCACCUGC---UCGUGGAcuaGUUGuuG- -5'
29599 3' -51.2 NC_006151.1 + 27229 0.67 0.972946
Target:  5'- cCGUGGACGcGCACCUccucggGGUCgGGCGGg -3'
miRNA:   3'- cGCACCUGCuCGUGGA------CUAG-UUGUUg -5'
29599 3' -51.2 NC_006151.1 + 33963 0.67 0.972946
Target:  5'- gGCG-GGACGcGGCGCCcGcgCGGgGACa -3'
miRNA:   3'- -CGCaCCUGC-UCGUGGaCuaGUUgUUG- -5'
29599 3' -51.2 NC_006151.1 + 66620 0.67 0.972946
Target:  5'- aCGacGGCGAGCGCCUGGccuUCcaccGCAACg -3'
miRNA:   3'- cGCacCUGCUCGUGGACU---AGu---UGUUG- -5'
29599 3' -51.2 NC_006151.1 + 100243 0.67 0.972946
Target:  5'- cGCGUGGuggcgcuCGAGCGCCUcuUCAccuGCcGCu -3'
miRNA:   3'- -CGCACCu------GCUCGUGGAcuAGU---UGuUG- -5'
29599 3' -51.2 NC_006151.1 + 104578 0.67 0.972946
Target:  5'- cGCGcGGACGuGCugCaGGcCGGCGGCa -3'
miRNA:   3'- -CGCaCCUGCuCGugGaCUaGUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 100604 0.67 0.974868
Target:  5'- cCGUGGAgCGcuuccuggcgcgcuGGgACCUGGUCAGCGccGCg -3'
miRNA:   3'- cGCACCU-GC--------------UCgUGGACUAGUUGU--UG- -5'
29599 3' -51.2 NC_006151.1 + 48403 0.67 0.975399
Target:  5'- cUGUGGGCGucgGGCaccgccuACCUGGUCAACc-- -3'
miRNA:   3'- cGCACCUGC---UCG-------UGGACUAGUUGuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.