miRNA display CGI


Results 41 - 60 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29599 3' -51.2 NC_006151.1 + 84682 0.69 0.938192
Target:  5'- -gGUGGACGAGCAgCUG--CGGCcGCu -3'
miRNA:   3'- cgCACCUGCUCGUgGACuaGUUGuUG- -5'
29599 3' -51.2 NC_006151.1 + 85372 0.7 0.910137
Target:  5'- cGCGUGGuccccggcgcgaACGucGGCGCCaacgaGGUCGACGGCg -3'
miRNA:   3'- -CGCACC------------UGC--UCGUGGa----CUAGUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 85568 0.7 0.916262
Target:  5'- aCGUGuACGGGgacCGCCUGcgCAACAACu -3'
miRNA:   3'- cGCACcUGCUC---GUGGACuaGUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 85645 0.68 0.959889
Target:  5'- aGCGgGGACGcGCccGCCUcGcgCAGCGGCg -3'
miRNA:   3'- -CGCaCCUGCuCG--UGGA-CuaGUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 85723 0.73 0.790377
Target:  5'- cGCGcGGACGAGCGCacgGAgcUCAcGCAGCu -3'
miRNA:   3'- -CGCaCCUGCUCGUGga-CU--AGU-UGUUG- -5'
29599 3' -51.2 NC_006151.1 + 85776 0.67 0.978171
Target:  5'- gGCGcUGGACGcGCACUcGAUCcGCGcgcGCg -3'
miRNA:   3'- -CGC-ACCUGCuCGUGGaCUAGuUGU---UG- -5'
29599 3' -51.2 NC_006151.1 + 86236 0.67 0.982611
Target:  5'- cGCGcUGcGACaucGGCGCCgugcuggccgUGGUCGACGACg -3'
miRNA:   3'- -CGC-AC-CUGc--UCGUGG----------ACUAGUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 89247 0.74 0.720985
Target:  5'- gGCGUcGuGuCGAGCGCCgucgUGGUCGACGGCg -3'
miRNA:   3'- -CGCA-C-CuGCUCGUGG----ACUAGUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 92750 0.75 0.668747
Target:  5'- gGCGcGGcACGGGCACCUGAgcgugCuGCGGCg -3'
miRNA:   3'- -CGCaCC-UGCUCGUGGACUa----GuUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 96628 0.67 0.982611
Target:  5'- cCGaGGGCGcgcAGCGCCUcGAgcUCGGCGGCg -3'
miRNA:   3'- cGCaCCUGC---UCGUGGA-CU--AGUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 97488 0.68 0.970018
Target:  5'- aCGUGGACGcgcAGCGCCUcg-CGGCggUg -3'
miRNA:   3'- cGCACCUGC---UCGUGGAcuaGUUGuuG- -5'
29599 3' -51.2 NC_006151.1 + 97607 0.67 0.982611
Target:  5'- cGCG-GGcACGuGCACCUGcg-AGCGGCg -3'
miRNA:   3'- -CGCaCC-UGCuCGUGGACuagUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 98410 0.69 0.938192
Target:  5'- aCGUcGaGACGGGCACCUGcgaGGCGGCc -3'
miRNA:   3'- cGCA-C-CUGCUCGUGGACuagUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 99913 0.67 0.975399
Target:  5'- aCGUGGGCGcgcgacuacGGCGCCgGccucauccccaacGUCAGCGGCu -3'
miRNA:   3'- cGCACCUGC---------UCGUGGaC-------------UAGUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 100243 0.67 0.972946
Target:  5'- cGCGUGGuggcgcuCGAGCGCCUcuUCAccuGCcGCu -3'
miRNA:   3'- -CGCACCu------GCUCGUGGAcuAGU---UGuUG- -5'
29599 3' -51.2 NC_006151.1 + 100361 0.72 0.852283
Target:  5'- uCGUGGACGccgugGGCGCCUuccgcgccgaGGUCAACAcGCa -3'
miRNA:   3'- cGCACCUGC-----UCGUGGA----------CUAGUUGU-UG- -5'
29599 3' -51.2 NC_006151.1 + 100604 0.67 0.974868
Target:  5'- cCGUGGAgCGcuuccuggcgcgcuGGgACCUGGUCAGCGccGCg -3'
miRNA:   3'- cGCACCU-GC--------------UCgUGGACUAGUUGU--UG- -5'
29599 3' -51.2 NC_006151.1 + 101195 0.74 0.761357
Target:  5'- cCGUGGACGcGUGCCUGcgCGAgGGCc -3'
miRNA:   3'- cGCACCUGCuCGUGGACuaGUUgUUG- -5'
29599 3' -51.2 NC_006151.1 + 101223 0.69 0.943033
Target:  5'- gGCGUGGACGgggcccggcgggGGCAUgUGcgccAUCAGCGAg -3'
miRNA:   3'- -CGCACCUGC------------UCGUGgAC----UAGUUGUUg -5'
29599 3' -51.2 NC_006151.1 + 101671 0.73 0.818016
Target:  5'- gGCGUGGGCGAgacGUACCUcGUgGACGAg -3'
miRNA:   3'- -CGCACCUGCU---CGUGGAcUAgUUGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.