miRNA display CGI


Results 61 - 80 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29599 3' -51.2 NC_006151.1 + 101934 0.68 0.966543
Target:  5'- cCGUGGccgGCGAGCcaggaggACCUGAgCAGCAcGCa -3'
miRNA:   3'- cGCACC---UGCUCG-------UGGACUaGUUGU-UG- -5'
29599 3' -51.2 NC_006151.1 + 102682 0.67 0.980485
Target:  5'- cCGUGGACGcgggGGCGCCcgGcgCgGGCGGCg -3'
miRNA:   3'- cGCACCUGC----UCGUGGa-CuaG-UUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 102946 0.66 0.987949
Target:  5'- cGCGcUGGACGcGGCGCCcGccgcccaCGACGGCg -3'
miRNA:   3'- -CGC-ACCUGC-UCGUGGaCua-----GUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 103063 0.68 0.96687
Target:  5'- gGCGcaGGcgcACGGGCACCUGG--AGCGGCg -3'
miRNA:   3'- -CGCa-CC---UGCUCGUGGACUagUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 104578 0.67 0.972946
Target:  5'- cGCGcGGACGuGCugCaGGcCGGCGGCa -3'
miRNA:   3'- -CGCaCCUGCuCGugGaCUaGUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 105753 0.77 0.562971
Target:  5'- cGCGUGG-CGGcGCGCCUGggCGACcGCg -3'
miRNA:   3'- -CGCACCuGCU-CGUGGACuaGUUGuUG- -5'
29599 3' -51.2 NC_006151.1 + 106621 0.66 0.989412
Target:  5'- cGCGUacgacgccgcGGucacCGAGCGCCUGGaCGccGCGGCg -3'
miRNA:   3'- -CGCA----------CCu---GCUCGUGGACUaGU--UGUUG- -5'
29599 3' -51.2 NC_006151.1 + 106949 0.77 0.573442
Target:  5'- ---gGGGCGAGCGCCUGcuggcgcUCGACGACa -3'
miRNA:   3'- cgcaCCUGCUCGUGGACu------AGUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 110104 0.7 0.916262
Target:  5'- cGCGUGGugGAGUcggacACgCUcAUCAACAGg -3'
miRNA:   3'- -CGCACCugCUCG-----UG-GAcUAGUUGUUg -5'
29599 3' -51.2 NC_006151.1 + 112621 0.71 0.883122
Target:  5'- gGCGcUGGACGAGCccugccgcguguGCCgcacGAUCGACGu- -3'
miRNA:   3'- -CGC-ACCUGCUCG------------UGGa---CUAGUUGUug -5'
29599 3' -51.2 NC_006151.1 + 113237 0.7 0.916262
Target:  5'- cCGUGGACGAGUACUgggcgGAgcaCGAgGGCu -3'
miRNA:   3'- cGCACCUGCUCGUGGa----CUa--GUUgUUG- -5'
29599 3' -51.2 NC_006151.1 + 113378 0.66 0.984557
Target:  5'- cGCac-GGCGAGUGCCUGcUCuGCAACa -3'
miRNA:   3'- -CGcacCUGCUCGUGGACuAGuUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 114320 0.66 0.987949
Target:  5'- uGCGc-GACGGGgGCCUGcgCGACGugcGCg -3'
miRNA:   3'- -CGCacCUGCUCgUGGACuaGUUGU---UG- -5'
29599 3' -51.2 NC_006151.1 + 118216 0.72 0.860332
Target:  5'- cCGUGGugGCGGGCGCCcgGAccaccgggcUCGGCGGCg -3'
miRNA:   3'- cGCACC--UGCUCGUGGa-CU---------AGUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 118794 0.7 0.927742
Target:  5'- cGCGcGGcGCGGcGCACCUGGccuUCGACGAg -3'
miRNA:   3'- -CGCaCC-UGCU-CGUGGACU---AGUUGUUg -5'
29599 3' -51.2 NC_006151.1 + 119463 0.68 0.96687
Target:  5'- aCGUGGACGccguGCGCUacgUGGcCGGCAGCc -3'
miRNA:   3'- cGCACCUGCu---CGUGG---ACUaGUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 120349 0.67 0.975661
Target:  5'- cGCGUGGccgggcucGCGGGCGCCUac-CAGCGc- -3'
miRNA:   3'- -CGCACC--------UGCUCGUGGAcuaGUUGUug -5'
29599 3' -51.2 NC_006151.1 + 121196 0.7 0.921555
Target:  5'- cGCGcucgGGGCGcgcacgcAGCACCUGGagccCGACGACu -3'
miRNA:   3'- -CGCa---CCUGC-------UCGUGGACUa---GUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 122145 0.79 0.491485
Target:  5'- cCGUGGACGAGUuCCUcgcgcgcacGAUCGGCGGCg -3'
miRNA:   3'- cGCACCUGCUCGuGGA---------CUAGUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 122330 0.66 0.991921
Target:  5'- cGCGUGGAcccCGAGgACgUGGcCAAgAACc -3'
miRNA:   3'- -CGCACCU---GCUCgUGgACUaGUUgUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.